Carassius auratus (goldfish): 113079349
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Entry
113079349 CDS
T07313
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113079349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113079349
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
113079349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_19
TPR_16
TPR_8
TPR_11
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
Fis1_TPR_C
TPR_MalT
ARM_TT21_C
PknG_TPR
TPR_15
TPR_21
TPR-S
COG4_N
SHPRH_helical-1st
HAT_PRP39_N
Motif
Other DBs
NCBI-GeneID:
113079349
NCBI-ProteinID:
XP_026107389
Ensembl:
ENSCARG00000040343
UniProt:
A0A6P6NG59
LinkDB
All DBs
Position
5:complement(18774280..18797022)
Genome browser
AA seq
1568 aa
AA seq
DB search
MSSKEVKAELKSAREAIKNKEYKEALKHCKAVLKLEKNNYNAWVFIGVAATELQQPDQAQ
SAYRKATELEPEQLLAWQGLSNLYEKSDQADFKAELPKIYQNLITLYESSDKAKCYEVSK
KLVEVYQSEKNYLQVARVWRRLIEVRAAEEGVECSELHELWKEMARLLQDTVEDQDNETQ
QHLVLAFERAFQMMVDVPSDAHSSLSLDYIKCLSKLPHEEFKLKEACDATMSLYPNLSYP
LEAMSEHYIRTGDCSERAVRCFSRLLKLDPNNSQAHFGLGIKACQERKYEDAIKKISLGL
KCMRSSIIGWYNLALAHLKMHKYSDSATASSQGLKSSVGNSDDWTQKLQKLKLEALVRTG
RDQDADEALQILTQISDAKNDPVLLALKGRAHLQKGQTEEAFQVSVELLSSHPGSVEGLT
LKGLAHVAKEQHKQAEESFLEALSGSPDNGELFFLLGRLYWNMGEEMRRDRSKAHTHLLK
AAKLDPCLGSVFRFLGHYYREVAKDQGRARGCYKRAFELDSSDAEAGAATVDLSMEQGDM
DSALTVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQATADLQAALRADPQDWVCWECL
GEAYLNRRSFTAALKAFDKAHTLQPTSIYSLYQTAAIKQILGRFKEAAAEYRQILEQEDY
VPALKGLGECLLALARNALDDYLDGRAVDLIQDAIHYLFRAVKQRPDLSCLWKLLGDACT
ASRTVSPNRAKVLVPGALCGMDPPDQSHTLDQRQLLTLGERCFGRALKLMPEAPSLWCDL
GLNYYHQSRLLNCLYPEHDAQSLLEKAMQCVKKAIMLDSANHTYWNTLGVVAMAKGIENF
ALAQHCFIKSVKAESNNVVAWTNLGALYLKKGNLELSHEAFKIAQSLEPLYVNCWIGQAI
IAETVGSFDTMDLFRHTTELSTHTEGVKGYAYCVCSTLLDKSNRDSELYLYNIVQMNAIS
AAQVALSKYTERIQTDPDAFIMLGYLNTHLQLKKQATEAYRRAVELLQASPHKDKLSFAL
RGYGHALSDDGQWEEAVRIYSSTPLEELHDLIGLALACFRIGRLPESVQAYEKALVVASS
EKEKACILTALALIQHRLGSMDHAKTLLFKCSMLKEPVPESLQCLCALGLVHGDVTLASA
TLTELLKLGEPIGGAVEERCLLTCTLLALQGNFSGVHREAARAIHRNPGNPSLWALLSRL
VPQYCPNKADGGAVAGSVACHASLTLGKRALLYSGVNQLASGRHSGEDRRRNALKTIQRA
VLLCPDDPAGWAGLMAACHTENTACLLTGSAPCREDLERAHMTLVSEKVKSLQAEDGLLA
QALEGWVLQQAVTGLKQSSQYDQAETLCSQVLSVSPEHPVVFLMLRQVQCERLMLSKAGN
CVPPAVLDQLSAAVMANHTSVSAWHWLAEVYRSQGLLAQASVAYKQSLQLASQLGDHFGK
MSSLLRLALLALMPCLAGVCVPEWKDLVLEASAEVLKMGSSPVALLFQALLQFSLKMGAR
ETRRLLEKIVYSSTSGNSETIVSVARWYLLRHLHAKDDLELIDTLLLKATAEGDSRLVDF
HRRLYPSN
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaagtaaaagctgagctaaaaagtgccagagaagccataaaaaataaa
gagtataaagaagctttgaaacattgtaaggctgttctcaaacttgagaagaataactac
aatgcctgggtgtttattggagtggcagccacagagctgcagcagccggatcaggctcag
agcgcctacagaaaggccactgaactggagccagagcagctgcttgcatggcagggttta
tcaaatctgtacgaaaaaagtgaccaagcagatttcaaagctgagctgccaaagatttac
cagaatcttattacactgtatgaaagctccgacaaagcgaaatgttatgaagtgagcaag
aagttggtggaagtctatcagtcggagaagaactatttacaggtggccagagtgtggagg
aggttaatcgaggtgagggcggcagaggaaggggtggagtgctcggagctgcatgagctg
tggaaggagatggccagactcctgcaggacactgttgaggatcaggacaacgagacccag
cagcacctggtattagcatttgaaagagcttttcaaatgatggtagatgtgcccagtgat
gcccacagcagcctttcactggattacattaaatgtctttctaagcttcctcatgaggag
ttcaagctaaaggaagcttgtgatgccacgatgtccctctatccgaatctctcctaccct
ttagaggccatgagtgagcactacatcagaacaggcgattgcagtgagagagccgtccgc
tgtttcagccgtctcttaaaactggatccaaacaactcgcaagctcactttggtctgggt
attaaagcttgccaggaaagaaaatatgaggatgccatcaaaaagattagtttgggactg
aagtgtatgcgctcctccatcattggctggtataatcttgctctggctcatctaaaaatg
cacaaatactctgacagtgccacagcttccagccaagggctgaagtcgagtgtggggaac
tctgatgattggactcaaaagctgcagaagttgaaactagaggctctggtgaggacagga
agagaccaggatgctgatgaagctctgcagatccttacacagatttcagatgccaaaaat
gaccccgtgcttctagcgttgaaaggaagagctcacttgcaaaagggccaaactgaggaa
gcatttcaggtttcagtggagctgctgagctctcacccaggatccgtggagggtctcact
ctgaagggactggcacatgttgctaaagaacaacacaaacaagctgaagagagctttctg
gaggctttatccggaagcccagataatggggagttgttcttcctgctggggcgcctgtac
tggaacatgggagaggaaatgcgaagggaccgcagcaaagcccacacacatctactcaag
gctgctaagctggacccgtgtcttggttcagtgtttcgtttcctgggtcattactataga
gaggtagcaaaagatcagggcagagccagaggctgctataagagagcgtttgagctggat
tcctctgatgccgaggctggagcggccactgtagacctcagcatggagcagggggacatg
gactcagctctgactgttctgcagtccgtaactgagagagccactccaggctctgccaaa
tgggcctggatgaggagaggtctgtaccacctcaagattggccagcatcaacaggccact
gcagatctgcaggcggcgttgagggctgatcctcaggactgggtgtgctgggaatgttta
ggtgaggcttacctgaaccgcaggagtttcacagctgccctgaaagccttcgataaagca
catacactgcagcctacttccatctacagtctctatcagaccgccgccatcaaacagatc
ctgggccggtttaaagaggccgctgcagagtacaggcagatcttagagcaggaggactac
gtgccggcactgaaaggtctgggtgaatgcttgctagccttggctagaaatgcactggat
gactatcttgatggaagagctgtagatttgatacaggacgccatccattacctcttcaga
gctgtaaagcaaaggccagatctgtcatgtctgtggaagttactaggtgatgcctgcacc
gcctccagaacagtgtccccaaaccgagccaaagtgctggtgcctggagctctatgtgga
atggatccacctgatcagagccatacactggaccagagacagctcctcactcttggagaa
aggtgctttggtcgtgctttaaaactgatgccggaggcccccagtctgtggtgtgacctc
ggcctcaactactaccaccaatccagactactcaactgcctgtatcctgagcacgacgca
cagtctctgctggagaaagccatgcagtgtgtgaagaaggcgatcatgcttgacagtgca
aatcacacatattggaacaccctcggggtggtcgccatggcaaagggaatagaaaacttt
gcacttgcacaacactgcttcatcaaatccgtaaaagctgagtcaaataatgtggttgca
tggaccaaccttggcgctttgtatctgaagaagggaaatctagagctctctcatgaagct
ttcaagattgctcagtctctagagcctctctatgtgaactgctggatcggacaggcaatc
attgctgagacagtgggcagctttgacaccatggatcttttcaggcacaccacagaactg
agcacacatacggagggagtgaagggctatgcatactgtgtttgctccacactgctggac
aagagcaacagagactcggagctctacctctacaacatagtccagatgaacgccatctct
gcagcccaggtggctctgagcaagtacactgagaggattcagacagacccagacgccttc
atcatgctcggatacctgaacacacacctgcagctgaagaaacaggccaccgaggcatat
cgcagagctgtcgagttgcttcaggcgtcccctcacaaagacaagctcagctttgctctg
aggggttatggacatgccctcagtgatgatggacagtgggaagaagcagtgcgtatttat
tcctccacaccactagaggagctccatgatctcatcgggcttgcactcgcttgtttcaga
atcggtcgcctgccagagagcgttcaggcctatgagaaagcccttgtagttgcctctagc
gagaaggaaaaagcctgtattctcactgcacttgccttgatacagcacaggctgggcagc
atggatcatgccaaaacgcttctcttcaagtgttccatgctgaaagagccagtaccagag
agtctgcagtgtctgtgtgctctgggtttggttcatggtgatgttaccctggcaagtgct
acgcttaccgagctgctaaaactgggggaacctataggaggtgctgtggaagagcgctgt
cttctcacttgcaccctgctggccttgcagggcaactttagcggcgtacacagagaggct
gctagggctatacacaggaacccaggaaatccatctctctgggctcttctctccagactg
gtcccacagtactgccccaacaaagccgatggaggtgctgtggccggcagtgtggcatgt
catgccagcttgacgcttggaaagagggcgttgctgtacagtggagtgaatcaactggcc
tcaggccggcactctggtgaggacagaagacgcaatgctctgaaaacaatccagagagct
gtactgctgtgtccagatgatcctgctgggtgggcggggctaatggccgcctgtcacaca
gagaacacagcatgcttactcacaggctccgccccttgcagagaagatctggaaagggcg
cacatgaccctggtgtctgaaaaagtgaagagcctacaggcagaggacggcctcttggct
caggccctggagggatgggtgctgcagcaggccgtaactggactcaaacagagcagccag
tatgaccaggcagagactctctgctctcaggttctgagtgtttctccagagcatcctgtg
gtgttcttgatgttaaggcaggttcagtgtgagcgcctcatgttgtctaaagctggtaac
tgtgttcctcctgcggtgctggatcagctcagtgctgcggtcatggccaaccacacatct
gtgtccgcctggcattggttggctgaagtgtaccgctctcagggtctgctggctcaggcc
tctgtggcatataaacagagtcttcagctggcctctcagctcggtgaccacttcggcaag
atgagcagcttgctccgactagccctgctagcacttatgccatgtttggctggtgtttgt
gtccctgagtggaaggatctggttttggaggccagtgctgaagtcttaaagatgggcagc
tcaccagtagctctgcttttccaagccttactgcagttctctttaaagatgggtgccagg
gaaacccgtcgcctgttggagaagattgtttattcttccacctcagggaactctgaaaca
atagtgtcagtggcacgttggtacctcctgcgccacctgcacgccaaagatgacctggag
ctgatagataccctgttgctgaaagcgacagcagaaggagacagcagactggtggatttc
cacagacgcctttatccatccaactga
DBGET
integrated database retrieval system
