Carassius auratus (goldfish): 113079771
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Entry
113079771 CDS
T07313
Name
(RefSeq) retinoic acid receptor RXR-alpha-B-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03320
PPAR signaling pathway
caua04148
Efferocytosis
caua04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
113079771
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
113079771
03320 PPAR signaling pathway
113079771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
caua03000
]
113079771
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
caua03310
]
113079771
Transcription factors [BR:
caua03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
113079771
Nuclear receptors [BR:
caua03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
113079771
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
113079771
NCBI-ProteinID:
XP_026107762
Ensembl:
ENSCARG00000054336
UniProt:
A0A6P6NFI1
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Position
5:19519102..19574962
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AA seq
515 aa
AA seq
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METKPFLSLGKWNEVIRKRATTGLLKNPCSVAPPCLRSWPGDAGSSPNGCSGFTGTYPLQ
QHRISTDSSGQLSSSPLSSSMGHRCISNHPLRPPLLSPSAMSSSPGQLHSPINGLPSPFP
VISSPMGHPSMSGPSSTSMTFRPSLSPQLTSPMNAVSSSEDIKPPLGLNGVMKVPAQPTG
TSLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRN
RCQYCRYQKCLAMGMRREAVQEERQRAKERSEAEFSSCANEDMPVEKILEAELAVEPKTE
TYVEANLSAPANSPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNE
LLIASFSHRSIAVKDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTEL
GCLRAIVLFNPDSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRS
IGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccattcttgtctctaggtaaatggaatgaagtaatacgcaagcgagct
actacagggctcctgaaaaacccctgctcagtagcgccgccgtgtttgcggagctggccg
ggcgacgctggcagttcgcccaatggctgctctggcttcacgggtacatacccgctacaa
cagcacaggatatccacagactcctccggtcagctctcgtcgtctcctctgagctcctca
atgggtcaccgatgcatcagtaaccatcctctccggccgcccctgctcagcccgtccgcc
atgagctccagcccgggtcagctgcactcgcccatcaacggcctgccctcgccgttcccc
gttatcagctcgcccatgggccatccttccatgagcggcccgtcctccaccagcatgacc
ttcagacccagcctgagcccacagctcacttcacccatgaatgcagtcagtagttcggag
gacattaaaccccccctgggtctgaacggggtgatgaaggtcccggcacagcctacaggc
acatccctctccctcactaaacacatctgtgccatttgcggagaccgttcatcaggtaaa
cactacggggtgtacagctgtgagggctgtaagggcttcttcaagagaacggtgagaaag
gatttgacgtacacttgccgagacaacaaggactgtttaattgacaaacgccaacgcaac
cgctgccagtactgccggtatcagaagtgcttagccatgggaatgaggagagaagccgtt
caggaggagcggcagcgggcgaaggagcggagtgaggctgagttcagcagctgtgccaac
gaggacatgcccgtggagaagattctggaagccgaactggcagtggaaccaaagacggag
acctacgtggaggccaacctgagtgcgcctgccaattctcctaacgaccctgtcacaaac
atctgccaagcagctgacaagcagctctttaccttagtggagtgggccaagcggatacct
cacttttcggatctcccactggacgatcaagtcatcctcctgcgagcagggtggaatgaa
ctcctgatcgcctctttttcgcatcgttccatagctgtgaaagatgggatattattagct
acaggccttcacgtccacagaaacagcgcacatactgccggggtgggagccatctttgac
agagtgctgacagagcttgtgtcaaagatgagagacatgcaaatggacaagactgaactt
ggatgcctgcgggccattgttctgttcaatccagattcaaaaggactgtctaatccatca
gaggtggaggcgttaagggaaagagtgtatgcatctctagaagcctactgtaaacacaaa
taccccgatcagcctgggagattcgccaagctgttactgcgtctgcctgccctgcgctcc
attggtcttaagtgtcttgaacatctcttctttttcaagttaatcggagacacacccatc
gacactttcctaatggaaatgctcgaagcgccacaccaaatgacataa
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