KEGG   Carassius auratus (goldfish): 113081129
Entry
113081129         CDS       T07313                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB11-a
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03020  RNA polymerase
caua03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    113081129
  09124 Replication and repair
   03420 Nucleotide excision repair
    113081129
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:caua03021]
    113081129
   03400 DNA repair and recombination proteins [BR:caua03400]
    113081129
Transcription machinery [BR:caua03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     113081129
DNA repair and recombination proteins [BR:caua03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      113081129
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L SHNi-TPR
Other DBs
NCBI-GeneID: 113081129
NCBI-ProteinID: XP_026108952
Ensembl: ENSCARG00000028159
UniProt: A0A6P6K9I8
LinkDB
Position
5:21726189..21727924
AA seq 117 aa
MNAPPAFESFLLFEGEKKITIVKDTKVPNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAG
YKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
NT seq 354 nt   +upstreamnt  +downstreamnt
atgaacgcgccaccggcattcgagtcctttttgctatttgaaggagaaaagaagatcaca
atagttaaagacaccaaggtgccaaatgcatgtctgttcactctgaataaagaggatcac
acactggggaacatcatccggtcacaactgctgaaggaccctcaggtgctgtttgctgga
tataaggttcctcatcctctggagcacaagatagtgatccgtgttcagacgacaccagac
tacagtccccaggaagccttcacgaatgccatcactgatctgatcagtgaactgtccctg
ctggaagagcgattcagggttgccatcaaagacaagcaagagggaatagaatga

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