Carassius auratus (goldfish): 113081376
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Entry
113081376 CDS
T07313
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113081376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113081376
03041 Spliceosome [BR:
caua03041
]
113081376
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113081376
Spliceosome [BR:
caua03041
]
Complex B
Other components
Prp19-related factors
113081376
Complex C
113081376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
NRDE-2
ARM_TT21
TPR_1
DUF4515
Motif
Other DBs
NCBI-GeneID:
113081376
NCBI-ProteinID:
XP_026109268
Ensembl:
ENSCARG00000061752
UniProt:
A0A6P6NKY7
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MATRNGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQSAQKPVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPSYEEVNNCHERALVFMHKMPRVWIDYCQFMVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAALRLAAVVNDENLVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEEGDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTIDPIKATGRPHTLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHTYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDRCPPKYSKTIYLLYAKLEEE
YGLARHAMAVYERATGAVEPEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRLTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNASGTVSDLAPGQSGVDDMKLLEQKAQQLAAEAEQ
DKPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDEDEDEDAEDGEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggcaacacgtaacggaaaggcagacgttttattcgaagatgatgatttgccttatgaa
gaagaaatcatcaggaacccgtattcagtcaagtgctggatgcgatacattgagcacaag
caaagtgctcagaaaccagtgctcaatatgatctatgaaagagctttgaaagagctgcct
ggcagttacaagttgtggtacaactacctgagagagagaaggaaacaggtgaaaggcaaa
tgtgtcacagatccatcatacgaggaggtgaacaactgtcacgagagagcacttgtgttc
atgcataagatgccgagggtgtggatcgactactgtcagttcatggtgtctcaatgcaaa
atcacacggagcagacggacgtttgatagggcgttaagagcgctacccattacccagcat
cctcgcatctggcccctgtatctccgctttgcccggaacttgcctctcccagaaacagct
attcgtgtttaccgccggtacttaaagttgtcacctgagaatgcagaggaatacattgat
tacctgcgttcagtcggacgtctggatgaagctgcgcttcggctggcggctgtggtcaat
gacgaaaaccttgtttcgaaggagggaaaatccaattatcagctctggcacgagctctgt
gacctcatctcacaaaacccagacaaggtgacttcactgaacgtgggagcgattatccga
ggaggtctcactcgctttactgaccagcttggcaaactctggtgctctctggctgattac
tacatccgcagtggacactttgagaaggctcgagatgtatacgaggaggccatcctaacc
gtagtcactgtgcgagacttcacccaggttttcgacagctatgcgcagtttgaggagagc
atgattgctgccaagatggagaccacgtctgaactgggacaagatgaagaaggtgacatt
gacttggagttgcgattggcccgttttgagttgctgataactagacgaccgcttttacta
aacagcgtgctgctgcgtcagaaccctcacaatgttcacgagtggcacaagagagtcaag
ctctatgagggccaaccacgacagatcatcaacacatacacagaagctgtgcaaacgata
gatcctattaaagccacaggaagacctcacactctctgggtgtccttcgccaggttctat
gaggataatgaacagctggatgatgctcggactatctttgagaaggccacaaaggtgaac
tacaaacaggtggatgatcttgcggcagtgtggtgtgaatatggagagatggagctgaga
catgagaattatgaccaagctctgcgtatactaagaaaagcaacagccattccagcgaga
aaagcagagtatttcgattcttcagagccagtgcagaatcgagtatacaagtcgctgaaa
gtgtggtccatgcttgcagacttggaagagagtctcggcacattccagtccacaaaggca
gtgtacgatcgcattattgatctccggatcgccacacctcagatcatcattaactatgcc
atgtttcttgaagaacacacctactttgaggatagtttcaaggcgtacgagcgtggcatt
gcccttttcaagtggcctaatgtccatgacatctggaacacgtacctcaccaagttcatt
gaccgttatggaggaaaaaagctggagagagcgcgagatctgtttgagcaagcgctggat
aggtgtccgcctaaatactccaaaacgatctacttgctgtatgctaagctggaagaggag
tacggtctggcgcgacatgccatggctgtgtatgagagagccactggagctgtagagcca
gaggaacgacatcagatgttcaacatctacatcaagagggccgcagagatttatggagtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgagcacgccaga
gacatgtgtctgcgcttcgctgacatggagagcaaacttggggagattgaccgagcgaga
gccatctactcatactgctctcagatctgtgacccgaggttgaccgctcatttctggcaa
acctggaaggagtttgagattcgccacggtaatgaggacaccattcgcgagatgctgcgg
attaaacgcagtgtgcaggccacatacaacacacaagtcaacttcatgtcctctcagatg
ctcaaggctaccaccaatgctagcggaacagtgtcagatcttgctcctgggcagagcgga
gtggacgacatgaagctgctggagcagaaggctcaacagctcgccgcagaggcagaacag
gacaaacccaaacctaaagacaagatccttttcgtcaggagcgacacctctcgcagtgaa
ctcgctgaactggctaaacaagctaatccagatgagattgacattgatgaagatgaggat
gaggatgcagaggatggggaaccagatgaggtgcaactggagcagaagtctgtccctaca
gctgtctttggaggactaaaggatgactaa
DBGET
integrated database retrieval system
