Carassius auratus (goldfish): 113082180
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Entry
113082180 CDS
T07313
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113082180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
caua03041
]
113082180
Spliceosome [BR:
caua03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
113082180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
PRP4
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_IFT140_1st
eIF2A
WD_LRWD1
Beta-prop_SPT8
Ge1_WD40
WD40_like
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
113082180
NCBI-ProteinID:
XP_026109804
Ensembl:
ENSCARG00000003737
UniProt:
A0A6P6NMS0
LinkDB
All DBs
Position
5:complement(23877429..23882707)
Genome browser
AA seq
507 aa
AA seq
DB search
MSDEDETPVVKKARIFYGSLEEKEKERLSREGVSSAARDAVKAGIKAGNINISSGESMEM
EEHVSERQAEVLAEFERRKRARQITVSTDDVEVKACLRALGEPITLFGEGPPERRERLRN
KLSVVGPDALKRSKKEDEKAKRTQDDYQQTWYHEGPSSLKEARIWLAKYSLPRAVERLDA
ARAHKEIPESTRTIKQQELHKALRNVNNFCSQIGDDRPISHCQFSPNSKMLVTASWSGLC
KLWSVPDCTLVRTLRGHNTNVGAISFHPQATLTLEESDVNMASCAADGSVKLWSLDSDEP
IADIEGHSMRVARVAWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDGFARVWDLRTGRCIMFLEGHHKEIYSINFSPNGFHVATGSGDNTCKVWD
LRHRRCMYTIPAHENLVSSVKFQPNDGHFLLTGAYDNIAKVWTHPGWSPLKTLAGHEGKV
MGLDLSPDGQLIATCSFDRTFKLWMSE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaagacgaaactccagtcgtgaagaaggccaggatcttctatggaagtctt
gaagaaaaggagaaggagcgtctcagccgagaaggagtatcttctgctgccagagatgct
gttaaagctggcatcaaggctgggaatattaacatctccagtggcgagtctatggagatg
gaggagcatgtgagtgagcgacaggctgaagtgctggcagagtttgagcgcagaaagaga
gcgagacaaatcaccgtctctactgatgatgttgaggtcaaggcctgcctccgagctctt
ggcgagccaatcacgctgtttggggaggggcctccagagcgacgagagagattgaggaac
aaactttcagtagtgggtcctgacgccttgaagaggtcaaagaaagaggatgaaaaagca
aagcggactcaagatgactatcagcagacgtggtaccatgaaggaccctcatctctgaaa
gaggcacgtatttggttagccaagtattcactgcccagggcagtggaaaggttagatgcc
gcaagggcacataaagagattccagaatctacaagaacaataaaacagcaagagcttcac
aaggccctacggaatgtgaataacttctgcagccaaattggcgatgaccgtccaatatct
cactgccagtttagccccaactctaagatgcttgtgactgcttcatggagtggcttgtgt
aaattgtggagtgtcccagattgtacgcttgtacgcacgttaagaggtcacaataccaac
gtgggagcgattagctttcatcctcaagccacactcacactcgaggagtccgatgtcaac
atggcctcctgtgctgcggatggatctgttaagctgtggagtttagacagtgatgagcct
atagcagacattgaggggcactctatgagagtggcgcgggtggcctggcatccctctgga
cgttttctgggcacaacttgctatgataactcatggcgactttgggatcttgaagttcaa
gaagaaattctgcatcaggagggtcatagtaaaggtgtccatgacctgcacttccacccg
gatggctctctggcaggaactggtggtttagatggatttgctcgtgtctgggacctgcgg
actggtcgttgtatcatgttcctggagggccaccacaaagagatttacagcatcaatttc
tcaccaaatggctttcacgtggcaacaggaagtggagataacacctgtaaagtgtgggac
cttcgtcacagaaggtgcatgtacactattcctgcccatgaaaaccttgtgtcttcagtc
aagttccagcctaatgatggccattttttgctgactggtgcgtatgacaacatagccaaa
gtgtggacccatccaggctggtcacctctgaagaccctggcagggcatgaagggaaggtc
atggggcttgacctttcacctgacggacagctcattgcaacctgctcttttgaccgaacc
ttcaaactctggatgtcagaatga
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