Carassius auratus (goldfish): 113090608
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Entry
113090608 CDS
T07313
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113090608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113090608
Enzymes [BR:
caua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113090608
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113090608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
G_path_suppress
NCBP3
FMP23
RRM_NFXL1
Motif
Other DBs
NCBI-GeneID:
113090608
NCBI-ProteinID:
XP_026112091
Ensembl:
ENSCARG00000051628
UniProt:
A0A6P6NU55
LinkDB
All DBs
Position
Unknown
AA seq
650 aa
AA seq
DB search
MEVTRQNFKEVLPEVCSAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKH
SMNFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPKPFSRTSPDIKFICQSSSIDFLASQG
FDFNKVFRSGIPYLTQEEESQLREQYEERRGQINGAGPVSYTPTSGTGSCKVPEDQREFI
RTVEQKVEALLKNSDQTLDLEPCTGFQRKLIYQTLNSKYPKGLHVETLETEKKERFIQIS
KVDEEERRRREQQKQQREQEELNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCG
PLPEELDDFKEVAMSVFPRLLDTKLMASTQPFKEIISNTSLAELHKQLRENPFRSPTTEC
PEGLRSYDTSTEQLHEAGYDAFITGLCFISMANYLGSFLSPPKSHISARSKLLEPFYNKL
FLMRVIDIPYLNMSGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSAF
VCLSQTEQVQIAMNTSRYAESYRIQTYAEYLQSRQKSTHSSRRWTDDGWDASYSTSGSSR
LQAVKRSISPSLEEQNHNADSSWTHYSSVKKMKTDGSCSQSYAEVAGSCDWPRLQPDEGG
TSVSPVQEEVEPEESSANQNQGKRSRRHKKRKSDASETTPPALFDVPQVW
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcaccagacagaattttaaagaggttcttccagaggtgtgtagcgctgtgcag
gaggcggacttcatctctatagacggagaattcacaggcatcagtgatgggccgtcagtc
agtgctctgaccaatggactggacacaccagaggagagatacaccaaactgaggaagcac
tccatgaacttcctgctcttccagtttggcgtctgcaccttcagatacgaccagaatcag
tccacgtacatcactaaagccttcaacttctacatcttccccaagcccttcagccgcacg
tctccagacatcaagttcatctgtcagagctccagcattgatttcctggccagtcagggc
ttcgacttcaacaaggtcttccgcagtgggatcccgtacctgacccaggaggaggagtct
cagctgagggagcagtacgaggagaggcggggccagatcaatggggcggggccagtctca
tacacgcccacctcagggacgggctcctgtaaggtccctgaagaccagagagagttcatc
cggacggtggagcagaaggttgaagctcttctgaagaactctgatcagactctggatctg
gagccctgcaccggctttcagaggaagctcatctatcagacgctcaactccaagtatcct
aaaggtcttcacgtggagacgctggagacagagaagaaggagcgcttcattcagatcagt
aaggtggatgaagaggagaggaggaggagggagcagcagaagcagcagagagagcaggag
gagctgaatgatgctgtgggcttctccagggttatcagagccatctccaaatctggtaaa
ctggtggtgggtcacaacatgctgctggacgtcatgcacaccatccatcagttctgtgga
ccgctgcctgaggagctggatgacttcaaggaggtggccatgtctgtgtttcccaggctg
ttggacaccaagctgatggcatccacgcagcccttcaaggagatcatcagcaacacatca
ctggctgaactgcacaaacagctgagagagaaccccttcagatcccccaccactgagtgt
cccgaaggcctccggagttacgacacgtccacagagcagcttcatgaggccggttatgac
gccttcatcactggactgtgcttcatctccatggcaaactacctggggtcttttctctcg
cctccaaagagtcacatctctgctcgctccaaactcctcgaacccttctacaacaaatta
ttcctgatgagggtgattgacattccctatctgaacatgagtggacctgaccttcagccc
aagagagatcacgtcctgtacgtcaccttccctaaagagtggaagaccagcgacctgtac
cagctcttcagcgccttcgggaacatccaggtgtcgtggatcgatgacacgtcggcgttc
gtgtgtctcagtcagacggagcaggttcagatagccatgaacaccagccgctacgccgag
agctaccgcatccagacctacgccgagtacctgcagtccagacagaagagcacacacagc
agcaggaggtggaccgacgacggctgggacgcttcctacagcacctcgggctccagccgg
ctgcaggcggtcaagaggagcatcagtccgtctctggaggagcagaatcacaatgctgac
agcagctggacacactacagcagtgtcaagaagatgaagacggacggaagctgctcgcag
tcgtacgctgaggtcgctggctcctgtgattggcccagactgcagcctgatgagggcgga
acctctgtgagtccagtgcaggaggaggtggagcctgaggagtcctcagccaatcagaat
caaggtaaaaggagccgcagacacaagaagaggaagtcagacgcttctgaaacgacgcca
ccggcactcttcgacgttcctcaggtgtggtaa
DBGET
integrated database retrieval system
