KEGG   Carassius auratus (goldfish): 113090831
Entry
113090831         CDS       T07313                                 
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03013  Nucleocytoplasmic transport
caua03015  mRNA surveillance pathway
caua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113090831
  09122 Translation
   03013 Nucleocytoplasmic transport
    113090831
   03015 mRNA surveillance pathway
    113090831
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:caua03019]
    113090831
   03041 Spliceosome [BR:caua03041]
    113090831
Enzymes [BR:caua01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     113090831
Messenger RNA biogenesis [BR:caua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     113090831
Spliceosome [BR:caua03041]
 Complex C
  Other components
   EJC/TREX
    113090831
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    113090831
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas3-like_C_2 AAA_19
Other DBs
NCBI-GeneID: 113090831
NCBI-ProteinID: XP_026112227
Ensembl: ENSCARG00000050917
UniProt: A0A6P6NTS8
LinkDB
Position
Unknown
AA seq 435 aa
MTENDVENELLDYEEDEVDAGGVGDTGLGHNDGIISIRKEGVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKESPHVVVGTP
GRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISE
LPEEIDISSYIEQTR
NT seq 1308 nt   +upstreamnt  +downstreamnt
atgacggagaacgatgttgagaatgagctgttggactatgaggaggatgaggttgatgca
ggtggagtcggggacacaggactcggacacaacgatggcattatatccatcaggaaagaa
ggggtcaaagggtcatatgtgtccatccactcctcaggattcagggattttcttctcaaa
ccagagctgctgagagctatagtggactgtggctttgaacatccatcggaggttcagcat
gaatgcattcctcaggcgatcctggggatggatgtattatgtcaggccaagtctggaatg
gggaagacggccgtctttgtgttggctacccttcagcagctggagccagtgacagggcag
gtgtcagtgttggtgatgtgtcacacccgagagctggctttccagatcagcaaagagtac
gagcgcttctccaaatacatgcccagtgtcaaggtggcagtgttcttcggtggtttatct
ataaagaaggatgaggaggttctgaagaaagagagtcctcatgtggtggtgggaactcct
ggacgcattctagctctgtctcgcaacaagagtctcaacctgcgccacatcaagcacttc
atcctggacgaatgtgacaagatgctggagcagcttgacatgcggcgtgatgtccaggag
atctttcgtatgacccctcacgagaagcaggtcatgatgttcagtgccaccctgagtaaa
gagatccgtcccgtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgat
gagaccaagctgacgcttcacggcctccagcagtactacgtcaagctgaaggacaacgag
aagaacaggaagctctttgacctcctggatgtgttggagttcaaccaggtggtgatcttc
gtgaagtccgtgcagcgttgtattgctctggctcagttgctggtggagcaaaatttcccc
gccattgccattcatagagcaatgcctcaagacgagagattagctcgatatcagcaattc
aaggatttccagagacggatcctggtggccacaaacctgtttggccgaggtatggacatc
gaaagagtcaacatcgcctttaactacgacatgcctgaagattcagacacatacctgcac
agggttgcaagggccggcaggtttggaacgaaaggtctggccatcacctttgtgtcagat
gagactgacgctcgcactttgaacgatgtccaggacaggtttgaggtgaacatcagtgaa
cttccagaggagattgacatctcatcatacattgagcaaacacgatga

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