Carassius auratus (goldfish): 113092319
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Entry
113092319 CDS
T07313
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03022
Basal transcription factors
caua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113092319
09124 Replication and repair
03420 Nucleotide excision repair
113092319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caua03021
]
113092319
03400 DNA repair and recombination proteins [BR:
caua03400
]
113092319
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
113092319
Transcription machinery [BR:
caua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113092319
DNA repair and recombination proteins [BR:
caua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113092319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
113092319
NCBI-ProteinID:
XP_026113685
Ensembl:
ENSCARG00000001397
UniProt:
A0A6P6NYI4
LinkDB
All DBs
Position
6:complement(5834063..5846919)
Genome browser
AA seq
783 aa
AA seq
DB search
MGKKDKSDRDKKSKKRYYDEEDDDEEVMMGGESQEAVPAAAGKQVDESSTKLDEYGAKDY
RLQMLLKNDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAISEPVCRPTHVHEYKLTAY
SLYAAVSVGLQTSDIIEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAF
PDVIQRLLQDTVIRDCRLRSAEGEETELITETISSKSAISKSQQDTGGPSTSQPADGQRT
GNQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQMEYPLLAEYDFRND
TVNPDINMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWMKSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSSREEQQQLLQKVLAAS
DLDAEEEVVMGDVGGKPQFSRRMGTMSSMSGADDTVYMEYQTSRSGKSLAGKNVHPLFKR
FRK
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaaaagataagagtgatcgagataaaaagtccaagaaacgttattatgacgag
gaagatgatgatgaagaggtgatgatgggcggtgagtctcaggaggctgttccagcagct
gctgggaagcaggtggatgaatccagcactaaactggatgagtatggagccaaagactac
agactacagatgcttctcaagaatgaccacacctcccggcccctatgggtggctccagat
ggtcacatcttcctagaggctttctctcccgtgtataaatacgcccaggacttcctggtg
gccatatcagagccggtgtgcagacctacccatgtgcacgagtacaagctgacggcttat
tctctatacgccgctgtgagcgtcggcctgcagacgtctgacatcatagagtacctgcag
aaactcagcaagacctctgtgccagacggcatagtgcagtttattaagttgtgcacagtg
agctacggtaaagtcaaactggtcctgaaacacaacaggtactttgtggagagtgcgttc
cctgatgtcattcagaggctcttacaggacacagtgattcgggactgtcgtcttcgttct
gctgagggtgaggagaccgagctcatcactgagaccatctctagcaaatctgcaatctca
aagtctcagcaggacactggtggtccgtccacctcgcagcctgcagacgggcagcgcaca
ggaaaccaggtgccagaggacatcttcagttactacgagcagatggacaaagaagaggag
gaggaggaagagacccaaacagtgtcttttgagatccgtcaggaaatgatagaggagctt
cagaaacgctgcattcagatggaatatcctctcctggctgaatatgatttccgtaacgac
acggtgaacccagacatcaacatggacctgaagcccaccgctgtgctgagaccatatcag
gaaaagagtctaaggaagatgtttgggaacggcagagctcgatctggagtcatcgtcctg
ccctgtggtgctggaaagtcactggtgggcgtcactgctgcctgcacagtgcgtaagcgc
tgtctggtcttgggaaactcctctgtgtcagtggaacagtggaaggctcagtttaagatg
tggtccacaattgatgactcccagatctgccgtttcacttcagatgctaaagacaaaccc
atcggctgctcggtggccattagtacttattctatgctgggccacaccaccaaacgctca
tgggaggctgagagggtcatggagtggatgaaaagtcaggagtgggggctcattatacta
gatgaggtgcacacaatcccagcaaagatgttccgtcgtgttctgacgatagtccaggct
cactgtaaactggggctcactgccacactagtaagagaggatgataagattgtcgatctg
aacttcctgattgggccgaagctctatgaggcgaactggatggaactacagaacagtggt
tacattgctaaagtccagtgtgctgaggtatggtgtcccatgtctcctgagttttatcgg
gaatatgtggccataaagacgaagaagagaattctgctctacaccatgaatccaaacaag
ttccgtgcatgtcagttcctgatccgcttccatgagcggagaaacgacaagatcatcgtc
tttgccgacaacgtcttcgctctgaaagaatacgccatccgcctgaacaaaccgtatatt
tatggacccacatctcaaggagaacgtatgcagatccttcagaactttaaacacaatccc
aaaatcaataccatcttcatctccaaggttggagatacttcatttgacctgccagaggca
aacgtgctaatccagatctcgtctcacggcggttctcgccgtcaggaagctcagagactt
ggcagagtgctgcgagccaagaaaggtatggttgcggaagaatacaatgcttacttttac
tcgctcgtctctcaggacacacaggaaatggcttattccaccaagagacagcgcttcctg
gtggaccagggatacagtttcaaggtgatcacaaaattggctgggatggaggaggaagac
ttgatgttttcctctcgtgaggaacagcagcagctcttgcagaaagttctggcagcatca
gatcttgacgcagaagaggaagtggtgatgggggacgtgggagggaagccacagttttct
cgccgtatgggaactatgagctccatgtctggcgcagacgataccgtctacatggaatac
cagacgtcccgcagtggcaagtctttagccggcaagaatgtccatcctctgttcaaacgc
ttccgcaagtga
DBGET
integrated database retrieval system
