Carassius auratus (goldfish): 113096355
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Entry
113096355 CDS
T07313
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113096355 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
caua03041
]
113096355 (snrnp200)
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113096355 (snrnp200)
Spliceosome [BR:
caua03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113096355 (snrnp200)
Complex C
U5 SnRNP specific factors
113096355 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
113096355
NCBI-ProteinID:
XP_026117511
Ensembl:
ENSCARG00000022941
UniProt:
A0A6P6P8J9
LinkDB
All DBs
Position
Unknown
AA seq
2134 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDRSQRTK
PQMLEERRAKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRKEVEQLLGPTDDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQYGEVRDEGSDDSEGVEADESSTLT
ANLGNTGDVMMTKKKDLHPRDIDAFWLQRQLSRFYNDAIVSQKKADEVLEILKTASDDRE
CENQLVLLLGFNTFDFIKVLRQHRRMILYCTMLASAQSEAEKEKIMNKMEADQDLSKVLY
QLQETEKEDIIREERSRRERVRKSRVDDLESMDIDHGEAVTSRQLLDLEDLAFTQGSHFM
ANKRCQLPDGSFRKQRKGYEEVHVPALKTKPFGDDETLVAIEKLPKYAQAGFEGFKTLNR
IQSKLFKTTMDTDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYIAP
MRSLVQEMVGSFGKRLASYGIVVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGER
TYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVAT
CLRVDPSKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV
FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYSFA
IHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE
LGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLNA
EIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYAVSHDDRSIDPLLERRRMDLVHTAATV
LEKNNLVKYDKRSGNFQVTDLGRIASHFYITHESIMTYNQLLKPTLSEIELFRVFSLSSE
FRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMVY
VTQSAGRLMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQSMSPLRQFRKLPEEVIKKI
EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVELT
ITPDFQWDDKMHGSSEAFWILVEDVDSEVVLHHEYFLLKAKYAQDEHLVTFFVPVFEPLP
PQYFIRISSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNTAFESLYQK
FPFFNPIQTQVFNALYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNPEGRCVYITPMEA
LAEQVFVDWHQKFQDTLSKKVVLLTGETSTDLKLLGKGDIIISTPDKWDILSRRWKQRKN
VQNVSLFIVDEVHLIGGDNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWL
GCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPVLVFVP
SRRQTRLTAIDILTFCAADVVPQRFLRSTEKDLAPFMENLSDVTLKETLSNGVGYLHEGL
SPTERRIVEHLFTSGAIQVMVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIYDV
LQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKT
VENKQDAVDYMTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQSKCISI
EDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYKNIPIRHHE
DTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLIQ
ACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESIFD
IMEMEDEDRTGLLQLTDVQMADVARFCNRYPNIELSYEVAEKDNIKSGNPVVVQVQLERE
EEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVVGVHNY
TLYFMSDAYMGCDQEYKFSMDVNEADSEGESDSD
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcacgtagtttgcagtatgaatataaagcgaactccaacttggtg
ttgcaagcggacagatctctgatcgaccgcacccgcagagatgagcccaccggggaggtg
ttgtctctggtcggcaaactggaggggacaaagatgggagaccggagtcagagaaccaaa
ccgcagatgcttgaggagaggagagcaaagagaagaaagagagatgaagacagacacgac
ataaacaagatgaagggcttcacactgctgtctgaggggattgatgagatggtgggcatc
gtgtacaagcccaagaccaaagagaccagagaaacttatgaaatcctcctcagctttatt
caggcagcccttggagatcagccgagggatatcctttgtggagcagcagacgaggtgttg
gccgtgctgaagaatgacaagatgagagacaaagaaaggaggaaagaggtggagcagttg
ctggggcctacagacgacacacgctaccacgtcctggtcaacctgggcaagaagatctca
gactatggtggagacaaagagcttcagaatatggatgacaacattgatgaaacctatgga
gtcaatgtgcagtttgagtctgatgaggaggagggcgatgaggaccagtacggagaggtt
cgtgatgaaggttctgatgacagtgagggagtggaggcagatgagagcagcaccctgact
gccaatctgggaaacacaggtgacgtaatgatgaccaaaaagaaagatcttcacccccga
gacattgacgctttctggcttcagcgacagctcagccgcttctacaatgatgctatcgtg
tctcagaagaaagcagatgaggtcttggagatccttaagactgccagtgatgacagagag
tgtgaaaaccagctggtgctgcttttgggcttcaacacattcgacttcatcaaggtcctc
cgccaacacagacgcatgatcctgtactgcaccatgctggccagtgctcaaagtgaggct
gagaaggaaaagatcatgaataaaatggaagctgatcaggatctttccaaagttctttac
cagctgcaggagaccgaaaaagaggacatcatcagggaggagcgatctcgccgggagaga
gtgagaaaatctcgtgtggatgatctggagtctatggacattgatcatggagaggctgtg
acctcgaggcaactgcttgatctggaagatctggccttcactcagggcagtcacttcatg
gccaacaagcgttgtcagcttcctgatggctccttccgcaaacagaggaaaggttatgag
gaggtccatgtgcccgctctcaaaaccaaaccctttggtgatgatgagacattggtggcg
attgagaagctgcccaaatatgcccaagctggattcgaaggattcaaaaccttgaatcgc
atacagagtaaactcttcaaaaccacgatggacacagatgagaacctgctggtttgcgcg
ccaacgggtgctggcaaaactaatgttgctctcatggcaatgctcagagagatcggaaag
cacattaacatggatggcaccatcaatgttgatgattttaaaatcatctacatcgctccc
atgcgctcactggtacaggagatggtgggaagctttggcaagcgcttggctagctatggc
atcgttgtttctgagctgactggagaccatcagctgtgtaaagaggaaattaacgccacc
cagattattgtgtgcaccccagagaaatgggacatcatcacccggaaaggaggagaacgc
acatatacgcagcttgtgcgccttatcatcatcgatgagatccacttgctgcatgatgac
cgtggccccgttctggaatccctgattgctcgaaccatccgcaatgtggaactgacacag
gaagatgtgaggctcattggcctcagtgccacactgcccaactatgaggatgtggcgacc
tgccttcgtgtagatccatccaaggggctcttctattttgacaacagtttccggcctgtg
cctctggaacaaacctatgtaggaattacagaaaagaaggctatcaagcgtttccagatt
atgaatgagatcgtctatgagaagatcatggaacatgcaggaaagaatcaggtgttggtg
tttgtgcactcgagaaaggagaccggaaagacggcacgtgcgatcagggacatgtgtttg
gagaaggacacactgggtttgttcctgagagaaggttcggcctccactgaggtcctgagg
actgaagcagagcagtgcaagaacctggagctgaaagatctgttgccgtatagttttgct
attcaccatgctggaatgaccagagtggacagaacgttggtagaggatctgtttgctgac
cgtcacattcaggtattggtgtctacggccactctggcctggggtgtgaacttgccagcg
cacaccgtcatcatcaaaggcacacaggtgtacagcccagagaaaggcagatggactgag
ctaggagccctggatatcctacagatgctgggtcgtgctggcaggcctcagtatgactct
aagggagagggtattttgatcacttcacatggagagctgcagtattatctgtccttgctc
aatcagcagctgcccatcgagagccagatggtggccaaactaccagacatgctcaatgca
gagatagtgttgggcaatgtgcagaatgccaaggatgctgtaaattggctgggttacaca
tacctttatgtccggatgttgcggaaccccactctatatgccgtctcccatgacgaccgc
agcattgaccccctgctggagcgacgcaggatggacctggtgcacacggcagccaccgtc
ttggagaagaacaacttggtgaaatatgacaagagatctggcaactttcaggtgacagac
ctaggccgcattgccagtcatttctacatcacccacgagtccataatgacttacaaccag
ctgctgaagcctacactgagtgagattgagctcttcagggtgttctcgctctcctctgag
ttcagaaacatcaccgtcagagaggaagaaaaacttgagcttcagaaactgcttgagaga
gtccctattccagtgaaggagagcattgaagagcccagtgcaaagattaatgtgctgctg
caggcatatatatctcagctcaaactggagggctttgctctcatggctgacatggtctat
gtgactcagagtgctggcaggcttatgagggcaatttttgagattgtcctgagcagaggc
tgggcccaacttaccgacaagactttgaacctttgcaagatgatcgacaaaaggatgtgg
cagtcgatgtctcccttgcgccagttccgtaagcttccagaggaggtcatcaaaaagata
gagaagaagaactttccctttgagcgcctctatgatctgaaccacaacgaaattggtgag
ttaatccgcatgccaaagatgggtaagaccattcataagtatgtccatcagttcccaaag
ctggacctggcagttcatttgcagcccatcacacgctctactctgaaagtggagctcacc
atcacaccagatttccagtgggatgacaagatgcacggctcatctgaggccttctggatc
ttagtggaggatgtggacagtgaggtcgttcttcatcatgagtacttcctcctgaaggcc
aagtacgcacaggatgagcatcttgtcactttctttgtgcccgtgtttgagccgctgcca
ccacaatacttcattcgcatatcttcagaccgttggctgtcatgtgagacacagctgcct
gtttctttccgtcacctgatccttcctgagaaatatcctccccccaccgagctgctggac
ctgcagccattgcctgtgtctgctctaagaaacacagccttcgagagcctctaccagaag
tttcccttttttaacccaatccagacccaagtgttcaatgcgttgtacaacagcgatgat
aacgtctttgttggcgcccccactggcagcgggaagaccatatgtgctgagtttgccatt
cttaggatgctccttcacaacccagagggccgctgtgtctacatcacacccatggaggct
ctggccgaacaggtctttgttgactggcaccagaagttccaggatactttgagtaagaag
gttgtcctgctcaccggtgagacaagcactgacctcaagttgctgggtaaaggagacatc
atcatcagcaccccagacaagtgggacatcttatcccgccgctggaaacagaggaagaat
gtgcagaacgttagtctcttcattgtagacgaggttcatctgattggtggtgacaatgga
cctgtgctggaggtgatttgctccaggatgaggtacatctcctctcagattgagcgtccc
atccgtatcgtggcccttagctcctctctgtccaatgctaaagatgtggcccactggctt
ggctgcagcactacagccaccttcaacttccatcccaatgtcaggccggttcctcttgaa
cttcacatccagggcttcaatgtgagtcacacacagactcgtctgctgtccatggctaaa
ccagtgtatcacgccataatgaaacattccccatccaagccagtgctggtgttcgtgcca
tcgagacgtcagactcgtctcaccgctatcgatatcctcacattctgtgctgcagacgtg
gtcccacaaaggttcctgcgttcaactgagaaggacctggctccattcatggagaatctg
tctgatgttacactgaaggagaccctctctaatggggtgggataccttcatgagggcctt
tcacctacggagcgcaggattgtggagcatctcttcacttctggtgccattcaggtgatg
gtagcatctcgttctctctgctggggcaccaacatctcggcccacctggtgattgtcatg
gacacgcagtactacaatggaaaaatccatgcatatgtggactacccaatctatgatgtg
cttcaaatggtaggaaaggctaaccgtcctctccaggatgacgagggccgttgtgttatc
atgtgtcaagggtccaaaaaggatttcttcaagaagtttctctacgagcctctgcctgtg
gagtctcacctggaccactgtcttcacgaccatttcaatgctgaaatcgtcaccaagacg
gtggagaacaaacaggacgctgtagactacatgacatggacgtttctgtatcgccgcatg
acccagaaccccaactactacaacctgcagggtatgtctcatcgtcacctgtcagatcat
ctgtctgaactggtggaaaacaccttgcaagatctggagcagtccaagtgcatcagcatc
gaggatgagatggatgtggcacctctgaatctgggcatgatcgcagcctattactacata
aactacaccaccattgagctgtttagtatgtcactgaacgccaagacaaaggtccgtggt
ctcatcgagatcatctccaatgctgcggagtataaaaacattcccatcaggcaccatgaa
gacactctgctgcggcagctggctcagaaagttcctcacaaactgaacaaccccaaattc
aacgaccctcatgtgaagaccaacctgctgctccaggctcatctgtcccgcatgcagctg
agcgctgagctccagtcagatactgaggagatcctaagcaaagctgtgaggctgatccag
gcctgtgtggacgtgctctccagtaatggctggttgagtccagcgctggctgccatggag
ctggctcagatggtcacccaagctatgtggtccaaagactcatacctcaaacagctgccc
cacttcacttctgaacacatcaagcgctgcacagacaagggtgtggagagcatcttcgac
atcatggagatggaagacgaggatcgcactggtcttctgcagcttacagatgtacaaatg
gcggacgtggcacgcttctgtaaccgctatcccaacattgaactgtcatacgaagtggct
gaaaaggacaacatcaagagtggaaatccagtggtcgtccaagtgcagttggagcgagaa
gaggaagttacaggtcctgtcattgctccattgttccctcagaaacgtgaagaaggctgg
tgggttgttattggagaccccaaatcaaacagtctcatctcaatcaagaggctaactctt
caacagaaggccaaggtgaaacttgactttgtggcacctgttgttggtgtgcacaactac
acactgtacttcatgagcgatgcctacatgggctgcgaccaggaatacaagttcagcatg
gacgttaatgaagccgacagtgagggggaaagtgacagtgattaa
DBGET
integrated database retrieval system
