Carassius auratus (goldfish): 113097651
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Entry
113097651 CDS
T07313
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
113097651
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
caua04054
]
113097651
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113097651
Pattern recognition receptors [BR:
caua04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
113097651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
DUF5740
AAA_22
Hydantoinase_B
Motif
Other DBs
NCBI-GeneID:
113097651
NCBI-ProteinID:
XP_026118706
Ensembl:
ENSCARG00000005617
UniProt:
A0A6P6PBR3
LinkDB
All DBs
Position
6:complement(14233026..14243218)
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AA seq
726 aa
AA seq
DB search
MSFISPSRALSLFSVSFLSSADSKRDRFKDQRRFSLSDGTATVMAAQMDFNLRPYQEEVV
QAALRGENSIIWLPTGGGKTRAAVYVTQKHLETTANAKVAVLVNKVHLVDQHFAKEFKPY
LERRYHITAISGDSNEKDFFGRLVKASDLIICTAQILENALINTEEEKHVELSDFTLLVI
DECHHTQKESVYNKIMGRYVEKKLRKEGNLPQILGLTASPGTGGNRKLDKAVEHVLQICA
NLDSVIVSTKSFKPVLQKVVPRPKKQYDIVEKRALDPFGDHLKAMMSMIHEFMPSIVSRS
LREMGTQEYEADVVELEKAGVQKENRLIAQCALHLRQYNDALLINDTVRMVDAFQGLDEF
YSSKKTKLLDGTDIFLQGLFDENRLELKQLASTACYENPKLARLERTLLDEFSDKNSRGI
LFSKTRRGTRCLYDWVNTKPALQRVNIRAGILTGAGTGANHMTQNEQKDTIKHFRTGILN
LLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQATGRARAVNSVYSVVAEEGGRELRRE
LTNEYLESLTAKAIDQVQQMSPREFRHKISELQQIAVLIRIQAEKKKDDRKQRYSPVQAQ
FQCRGCFLPVCSGEDLRKIENTHHVNINPEFVRHYKKGRQVFLERSFEDWEPGRVINCNK
CGKDWGMEMKFRRVVILPCLNIKSFSLKTPGGKSTPKQWKDVEFQVKELDFLEDLSSRFP
NLNLND
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcatctcccctagtcgggccctctctctgttttcggtttcatttctcagctca
gcagactcaaaaagagaccgttttaaagaccagaggaggttcagcctctcagacgggacc
gctacagtaatggcagcacagatggacttcaatcttagaccgtaccaggaagaggtggtg
caggcagcactccgaggggagaacagcatcatctggctgcccaccggtggaggaaaaacc
cgtgctgcggtttatgtcactcagaagcacctggagaccacagccaatgccaaagtggca
gttctggtcaacaaggtgcatctagttgaccagcactttgcaaaagaattcaagccttat
ctcgagagaagataccatataacagccatcagtggggacagtaatgagaaagactttttt
gggcgtctagtcaaggcctcagacctgatcatatgcacggctcagatcttggagaatgcc
ctgattaacacggaggaggaaaaacacgtggagctgtctgattttaccctgctggtaata
gacgaatgtcaccatacacaaaaggagagcgtctataataagattatgggccgctatgtt
gaaaagaaattaagaaaagaagggaatctgcctcagattttgggtctcacagcatcacct
ggtacaggaggaaataggaaactggataaggctgttgaacatgtactgcagatctgtgcc
aatctggactcagtaattgtgtccaccaagagttttaaaccagtgctgcagaaagtcgtc
cctagacccaaaaagcaatatgatattgttgaaaaaagagctctggatccatttggcgac
cacttaaaggcaatgatgtcgatgattcatgagtttatgccgtcaatagtgagtcgcagc
ctgcgagagatgggcacccaggaatatgaagctgatgtggtggaactcgaaaaagcaggt
gtacagaaagagaacagactgattgctcagtgtgctttgcacctgcggcaatacaacgac
gctcttctcattaatgacacggttcgcatggtggacgcgttccagggtttagacgagttc
tacagttcaaagaaaaccaaactgttggatggaacagacatctttctccagggacttttt
gatgagaatcgcctggagctgaaacagctggcatcgactgcctgctacgaaaaccccaaa
ctggcccgtttggaacgcacattgctggatgagtttagtgataaaaactctcgtggtatc
ctcttctcaaagacccgcaggggcacccgttgtctttatgactgggtgaacaccaaacct
gcactgcagagggtcaacatcagggctggcattctcactggagcgggtacaggtgcaaat
cacatgacccagaatgaacagaaggacaccataaaacattttcgaactggaatcctcaac
ctcctcatctccaccagcgtagctgaggaagggcttgatattccagaatgcaacttagtt
gtacgttacgggctgttgaccaatgagatcgctcagcagcaggccactgggcgggctcga
gctgtgaacagcgtctattcagtggtggctgaagaaggtgggcgagaactacgcagggaa
ctcaccaatgagtatctagaaagtctgacggcaaaagctattgaccaagtgcagcaaatg
agtcccagagagtttagacacaagataagcgagctccaacaaatcgctgttctgattcga
atccaggccgagaagaagaaggatgaccgaaagcaacgctatagtcctgttcaggctcag
tttcaatgcagaggatgcttcttgcctgtctgcagtggagaagatttaagaaaaatagaa
aatacacaccatgtcaacatcaaccctgagtttgtgaggcattataaaaaaggaaggcag
gtctttctggagaggagctttgaagattgggagcctggacgggttatcaactgcaacaaa
tgtggaaaggattggggaatggagatgaagttcaggagggtggtaatactcccctgctta
aatataaaaagcttttccttgaagactcctggaggcaaatccactcccaagcagtggaag
gatgtcgagttccaggtgaaagagctcgactttcttgaggacttgagcagccgtttccct
aacctaaacttaaacgactga
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