Carassius auratus (goldfish): 113106005
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Entry
113106005 CDS
T07313
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113106005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113106005
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113106005
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
113106005
NCBI-ProteinID:
XP_026123276
UniProt:
A0A6P6PNT7
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Position
1:26642250..26651191
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AA seq
553 aa
AA seq
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MSAEEADKTTAAEASAGDEEEEWLYGDEGESKETEEEEEEEAKLTAAISVTSTPPVSEEV
TPTADITTTTGNGVASQEEAPGEDEDSESDSDDDDDDVRVTIGDIKTGAPQYTAYGGTPV
NLNIKSAGSRAYGAGSKVKGIDLDAPGSINGVPVLEVDMESFEEKPWRKPGADLSDYFNY
GFNEDTWKAYCEKQKRLRMGLDIHNIGATTSKISVQQGRTGNSEKEITVAAHAAKADFSS
PSNLYKAGLNPARISPPHWAGPAAQEMSYYTKTPGTIDVIGRQTATISRVEGRRRHNLEG
NNIQVISEPESEPAKMPPPFFPPGPLPPNIPPPPFLPPPVSQAPPLIPPPRIPITVPPPN
FPPPTGGPPPSLINMDNSGHPGGYDGRPVAPYPFPPGGFPPPMQGAVNPWPGLMDNTKQW
DYYPRRDKEREKERERDRPRERGHERDHSPTSVAYNSDEERFRSYRDYGERGGYERHRER
SSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKKSKRSKEGKEPSE
ERSADQENQEAME
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaggcggataaaaccaccgccgctgaagcgagtgcaggagacgaggag
gaggaatggctgtacggggatgaaggtgaaagtaaagaaactgaagaagaagaagaagaa
gaggccaaactgacagccgccatcagtgtgacctctactcctcctgtttctgaggaggtc
accccgaccgctgacatcaccaccactactggaaatggtgtggccagtcaggaggaagca
cctggagaagatgaagacagtgagagcgacagcgatgatgacgatgatgatgtccgtgtc
accatcggcgatatcaaaacaggagcaccacagtacacggcatatgggggaactcctgtg
aatctgaacataaagtcagctggcagcagagcttatggagcaggtagtaaagtgaaaggc
atagacctcgacgctccaggcagcatcaatggagttccagtcctggaagtggacatggaa
tcctttgaggagaaaccatggaggaagcctggtgcggacttgtcggactattttaactat
ggttttaatgaggacacgtggaaagcgtactgtgaaaagcagaagaggttacgcatgggc
ctcgacattcacaacattggagccaccaccagcaagatctcagttcagcagggtcgcaca
gggaacagtgaaaaggagatcacagttgcagctcatgcagctaaagcagacttttcctct
ccatctaacctgtataaagcaggtctcaacccagcgaggatatcccctccacattgggca
gggcctgccgctcaagaaatgtcctattatacgaagacacccgggaccatagatgtgatt
ggccgacagactgcaaccattagcagggtggaaggacgacgtcgccacaatctggagggc
aataacatccaggtgatctcggaacctgagtctgaacccgccaagatgccgccccctttc
tttccccctggaccactgcctccaaacatcccacctcctccattcctccctcctcctgtc
agtcaggctccacctctaatcccgcctccacggattcccatcactgttcctccacccaat
ttcccccctcccactggaggacctcctccttcacttattaatatggacaacagtgggcac
ccgggaggatatgatgggcgtcctgttgctccatacccttttcctccaggtgggtttcct
ccacccatgcaaggagctgttaacccctggcctggtttgatggacaacacgaagcagtgg
gactactaccctcggcgagacaaagagagggaaaaagagcgagagagggacagaccgagg
gaacgtggccatgagagagaccacagtcccacctctgtggcttataacagtgatgaagaa
cggtttcgttcttaccgtgactatggagagcgaggagggtatgagaggcatcgggagcga
tcgagccgtgagaaggaggaacgtcacagagagaggaggcacagagagaaagaagaaggg
aggcacaagtcatcacggagtagtagcagacggagacatgacagcgaggagggtgacagt
caccggcgccataagcacaagaagtccaagaggagcaaagagggcaaggagcccagcgag
gagcgttctgctgaccaggagaaccaggaggccatggagtaa
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