Carassius auratus (goldfish): 113106276
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Entry
113106276 CDS
T07313
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04382
Cornified envelope formation
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
caua04518
Integrin signaling
caua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113106276
04518 Integrin signaling
113106276
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113106276
09142 Cell motility
04820 Cytoskeleton in muscle cells
113106276
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113106276
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
caua04147
]
113106276
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113106276
Exosome [BR:
caua04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113106276
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113106276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113106276
NCBI-ProteinID:
XP_026123794
Ensembl:
ENSCARG00000012637
UniProt:
A0A6P6PSF2
LinkDB
All DBs
Position
7:23685869..23773773
Genome browser
AA seq
1715 aa
AA seq
DB search
MKPWSFVLPVVLFAVSAQGGSKLQEPCAGRDCSGPCPCLPLKGSRGQPGEFGQAGSSGPE
GLIGAPGPVGPKGEKGHVGRSGPSGPNGDKGPMGVPGFSGNDGVPGHPGQEGPRGPPGLD
GCNGTRGDPGDRARDGFPGLPGAPGLPGPKGLKGEPFYIDLSGQNFSIKGPPGPVGFSGL
MGLRGPDGFAGLPGPPGPPGPPGSPGQGYKGEPGEKGEVGPPGLRGSPAVQFNAPPLSTI
NKGEKGDVGPPGDPGLPLVNGVVELVGFPKGDKGTKGEKGYDGAPGSPGRPGPPGPFGYR
GETGEKGILGMPGSRGPPGLNGPPGLSGIKGFPGTAGFPGQPGFTGPKGERGDQGPPGPI
VDAVDGIKGPPGDPGFPGYPGITGDTGFPGLPGQPGPPGQAAFVSGRPGISGFPGGRGPK
GPRGNPGRDSYGPEGLPGSQGFPGPPGPPGPPGSTSNLFPTGSPGFPGQPGLRGRPGDRG
FKGFKGENGDCNCLGGGTIGAQGPQGPPGPTGFIGLNGVKGEIGDPGFQGPRGPQGFDGR
AGDRGFKGRKGEKGNYFFPEGRGQKGDMGQQGLPGPLGPSGKPGKDGSPGFPGEPGLPGE
PGFGVSGSKGFPGIPGLKGRPGDRGEPGIGYPGVAGFKGSQGDPGFNGLPGTPGPKGIQG
DSCGQAGLNGASLEEGGTPLPCRIPGEFGDPGYFGNPGVPGPKGRPGSPGASGRPGFDGP
KGERGEQGSGGQPGPQGFPGPRGDPGLPGKTNAGLPGPPGRDGFPGLPGAKGEPGVVLGA
TPGGPGSPGRPGEPGDKGQPGVPGVLGRPGNDGRNGFPGIKGERGVDGIPGLVGPIGPPG
EIPPGGVPGPRGPPGAKGFDGPPGCQGFPGLKGMRGDPGPPAPGGIKGVTGLPGLPGSQG
FRGPPGPPGIGTRPGIPGRPGIKGEKGSLGLVGFPGLPGSPGVPGGPGVKGLPGYAGQDG
SPGGTGSRGTKGDRGDPGRPGPSPVLPVEQLEKGQKGEPGGGGLPGFTGPRGDKGLPGSP
GRQGFPGLPGVAEQAKGFPGQPGLPGIPGSFGFPGPKGSPGVIGFPGSPGLSGDDGVPGV
QGFPGTPGQPGGKGEKGDSYDLSGPPGPKGVIGNRGFPGGPGLPGEPGDPGFPGIVGLQG
QKGFPGDPGAPGFGGSPGLPGIRGLPGYPGQKGRDGDLGRPGAPGSPGEKGFPGSPGLDG
LNGLPGSKGLSGVPGVTEGGRTGAPGVNGLKGERGSSQPGAPGRPGEKGSRGDTGASGLR
GFPGNPGPPGPPSPSNIPGPSGDPGLPGLDGREGPIGPPGLPGPPGPGTVQGDRGDAGVP
GRPGIPGPRGDPGGSGQPGFQGSPGFKGQRGDPGFGGVRGAPGIPGEPGDYGRNGPKGLK
GNSGLKGPPGIVVLPNRTESMPLGEQGPPGLDGSVGQAGFPGLPGSPGFPGPKGRRGPEG
RLGPVGAAGSPGAFGDPGPAGIQGPTGTQGARGPTGMQGRPGPPARSTSIGYTLVKHSQS
TQVPMCPQGMAKLWEGYSLLYVEGQEKAHNQDLGLPGSCLPHFSTIPFLYCTVNEICHYA
SRNDKSYWLSTSAPIPMMPVADQQISQYISRCSVCEAPAQAVAIHSQDLSIPTCPQGWRS
LWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHFFSNKYSFWLTT
VEKNEQFFQGPSQETLKGDDYRSRISRCQVCMKIL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atgaagccttggagttttgtgttaccagttgtcttgtttgcagtgtctgctcaaggggga
tcaaagctgcaggaaccgtgtgcaggccgggactgtagtgggccgtgtccgtgtttgccc
ttaaagggtagcagggggcaaccaggggaatttggacaggcaggcagcagtggtcctgag
ggtctcattggggccccagggccagttggacccaaaggagaaaagggccatgtaggacga
agtgggccctctggaccaaatggagataagggcccaatgggtgttcctgggttttctggt
aatgatggtgttccaggacaccctggtcaggaggggcccaggggacctccaggcttggac
ggctgtaatggcacacgaggtgacccaggcgatagagcccgtgatggatttcctggtctt
cctggtgctcctggcctccctggtccaaaaggtctaaaaggagaaccattttatatagat
ctttctggacaaaatttttccatcaaaggccctccaggtccagtgggattttcaggtcta
atggggcttagaggtccagatggatttgctggtctgccgggtccacctggccctcctgga
cctccaggaagtccaggtcagggatacaaaggagagccaggagaaaagggggaggttggt
ccaccaggactcaggggcagtccggccgttcagtttaacgcaccacctttaagcactatc
aacaaaggagagaagggagatgtgggcccgcccggtgacccaggcctcccactggtcaat
ggagtggtggagcttgttggctttccgaaaggagacaaaggaactaagggtgagaaaggc
tatgacggtgctccaggttctccaggaagaccaggaccaccaggcccatttgggtacaga
ggtgagactggagaaaagggaatcctgggcatgccaggctcaaggggcccacctggtctg
aacggtcctcctgggctttctgggattaagggtttccctgggactgctggttttccagga
caaccaggttttaccggcccaaagggtgaaagaggagaccaaggtccacctggaccgatt
gtggatgcagtggatggaattaaaggtcctccaggtgatcccggctttcctggttatccg
gggataactggagatacaggttttccagggcttcctggtcagcctggtcctccgggacag
gctgcttttgtctcaggtcgtccaggcatctctgggttccccggtggccgtggacccaaa
ggaccaaggggaaacccaggtcgggattcttatggtcctgaaggtcttcctggaagtcag
ggctttcctggacctccaggtccccctggaccaccgggaagtacatcaaacctgtttccc
actggatcacctggatttccgggtcagcctggtctaagaggacgtcctggagacagaggc
tttaaagggtttaaaggagaaaatggtgactgcaactgtttgggtggaggaacgattggt
gcacagggacctcaagggcctccagggcccacgggttttataggactcaatggagtaaag
ggagaaattggtgacccaggcttccagggaccccgtggaccacagggctttgatggtcgt
gcgggtgacagaggatttaaagggcgtaaaggagaaaaaggtaattatttcttccctgaa
ggccgagggcaaaaaggtgatatgggtcaacagggtcttccaggaccacttggaccaagc
ggcaaacccggaaaggatggctctcctggcttccctggagaaccaggtctacctggggag
cctggttttggggtgtctggaagtaaagggtttcctggtattcctgggctcaaaggtcgt
cctggtgacaggggtgaacctggtattggctatcctggcgtagctgggttcaaagggtca
caaggtgatcctggattcaatggtcttcctggaacacctggacctaaaggaattcaaggt
gacagctgtgggcaggcggggcttaatggtgcctctttggaagagggaggaacacccctg
ccctgtaggattcctggtgaatttggagatccaggatactttggaaatcccggtgtgcca
gggccaaagggtcggcctggttccccaggagcaagtgggcgcccagggtttgatgggcca
aagggtgagagaggagaacaaggctctggaggtcagccaggacctcaggggttccccgga
cccagaggagatccaggtttaccaggaaaaacaaatgccggcttaccagggcctccagga
agagatggttttccaggtttgccaggagctaagggggaacccggtgtggtgcttggggcc
actcctggaggtccaggttctccagggagaccaggagagccaggagacaagggtcaacct
ggtgtgcctggtgtactagggaggcctggtaatgatggacgcaatggctttcctggcata
aagggagaacgaggtgtggatggaattcctggtcttgtaggtcccattggtccaccagga
gaaatccctcccggaggtgttcctggtcccagagggccacctggagctaagggatttgat
ggacctccaggctgccaaggtttcccagggttgaagggtatgagaggagatccaggacct
ccagctcctggtggaataaagggtgtaacaggacttcctggactcccagggtctcaggga
tttaggggacctcctggaccccctggcattgggacacgtcccggcatacctggaagacca
ggaataaagggggagaaggggtctcttggattggtggggtttccaggtttacctggttct
cctggagtcccaggtggcccaggtgttaaaggtttacctggttatgctgggcaggatggc
tcacctggaggaaccggatcaagaggaaccaaaggggatcgcggtgatcctggtcgtcca
ggaccctctccagtgcttccagtagagcagctggaaaagggccaaaaaggtgaaccagga
ggtggtggactgcctggtttcacaggaccaagaggtgataagggtcttccagggtctcct
ggacgtcaaggctttcctggattacctggtgttgcagagcaagcaaaaggttttcctggc
cagcctggactcccaggtattcctggctcctttggcttccctggtcccaaaggttcacca
ggagttataggcttccctggctcaccaggcctgagtggtgatgatggtgtacctggggtt
caaggtttcccaggaactccaggacaacctggtggcaaaggtgagaaaggtgattcatat
gatttatctggaccccctggaccaaagggtgtgattggaaatcgtggattcccaggtggt
ccaggacttcctggtgaaccaggtgatcctggtttcccaggaatagtgggattacaaggc
cagaaaggttttcctggagatccaggagcacctggatttggtggctcaccaggcctccca
ggcattaggggtcttcctggttatccaggacagaaggggcgtgatggagatttaggccgt
cctggagctccaggttcaccaggagagaaaggttttccaggatcacctggtttagatgga
ctcaatggtcttccaggatccaaggggttgtctggagtcccaggtgtgactgaaggtggt
cggactggagctcctggtgtgaatggcctgaagggggagagaggctcatcacagcccgga
gcacctgggcgcccgggagaaaaaggatccagaggagacactggtgcctctggtttgaga
ggcttccctggtaatcctggcccccctggcccacctagtccttctaatatcccaggtcct
tccggagaccctggacttccgggattagatggacgagaaggtcccattggccctcctggc
cttcctggtccaccaggccctggaacagtccaaggagacaggggagatgccggagttcct
ggacgaccaggaataccaggaccacgtggagaccctggtggttctggtcagcctggattt
caaggcagtcctggttttaaaggacaaagaggtgaccctggctttggtggtgtacgtgga
gcaccagggatccctggagaaccaggagattatgggaggaatggacccaaaggattaaag
ggtaattccggtcttaagggacctccaggtattgtggtcctacctaacagaaccgaaagt
atgcctttgggggaacagggcccaccaggtcttgatgggtctgtcggtcaggcaggattt
ccaggcctgccaggcagtccaggattcccaggtcccaaaggacgcagagggccagagggt
agacttggtcctgttggtgcagctggatctcctggagcttttggtgaccccggacctgca
ggaatccaaggacccacaggaacccaaggagcccgtggcccaacaggaatgcaaggtcgt
cctggtccaccggcgcgcagtaccagtatcggttatactttggtgaaacacagtcagtcc
acccaggtgcccatgtgtcctcaaggcatggccaagctgtgggagggttacagtttgctc
tacgtggagggacaggagaaagcacacaaccaggacctgggattgcccggctcctgcctg
ccgcatttcagcaccatccccttcctgtactgcacagtcaatgagatctgccactacgcc
agtcgtaatgacaaatcctactggctgtccacctcggcacccattcccatgatgcctgtg
gcagatcagcagatatcccagtacattagccgctgctcagtgtgtgaagctccagctcaa
gcggtcgctatccatagccaagacctcagcataccgacctgcccacagggttggagaagt
ctgtggattggttactccttccttatgcacacagccgctggtgccgaaggaggcggtcag
tcattggtgtctcctggttcttgtctggaggatttccgcgccacccccttcatcgagtgc
aacggagcccgcggcacctgccacttcttctccaacaagtacagtttctggttgaccacg
gtagagaagaacgaacagttcttccagggtccttcccaggagacgctgaagggagatgat
taccggtcacgcatcagtcgctgtcaagtctgcatgaagatcttgtag
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