Carassius auratus (goldfish): 113106277
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Entry
113106277 CDS
T07313
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
caua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113106277
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113106277
09142 Cell motility
04820 Cytoskeleton in muscle cells
113106277
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
caua04147
]
113106277
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113106277
Exosome [BR:
caua04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113106277
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113106277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113106277
NCBI-ProteinID:
XP_026123800
Ensembl:
ENSCARG00000012569
UniProt:
A0A6P6PUI0
LinkDB
All DBs
Position
7:complement(23639994..23685190)
Genome browser
AA seq
1686 aa
AA seq
DB search
MNLQGLGAVLLLFLTISTEVRKSEAAACHGCGTGPKCDCSGVKGQKGERGFPGLTGQLGV
PGFQGPEGPIGPRGEKGDDGPNGPSGPKGIRGPSGLPGFPGTPGIPGIPGQDGPPGPKGI
SGCNGTKGERGFPGNPGLPGLVGSPGPPGSIGPKGEPGDIIEISRLSENGDPGIGGLPGS
RGDPGPPGLPGPVGPPGPRGYEGRLGPPGPPGPKGNMGLNFQGPKGEKGDRGLQGPPGPP
GQVGEVSGSPDTVIQQGEKGDRGQPGNPGFPGPPGPPGPQGGQKGEKGESGEPGKRGKPG
KDGEQGLPGYPGDKGEPGPPGLSGRDGARGEKGDRGPPGPPSYRDGQFIGIGGTGPKGDR
GEPGFPGPKGDRGLPGIQGPPGPSGPTGIGGPGPPGQPGLPGERGEKGDEGEPGISFPGQ
PGKTGPPGPQGVPGPPGPPAIFNGDQECNRGPPGPPGLQGEQGFTGEIGQKGQKGETCVN
CFSNGNPVPGPPGFPGPPGNPGAPGLPGTKGDRGYPGGPGLMGPPGIPGPQGLPGVPGEK
GDPGDAPSVPGVKGEKGDTGFPGPSGLPGLDGRPGRDGVPGPPGLRGPPGSALMKGSQGP
SGEPGLPGPPGDRGLPGPPGFGPQGPPGEKGIQGVSGRPGGPGAPGQKGEPGLAVSDKGE
RGPPGRDGEPGLPGSPGNPGLPGQPGFPGLPGSKGDPGLPGIGLPGLPGPKGFAGIAGSP
GGPGIPGRPGLDGLPGQPGLPGPKGDPGFGLPGPQGPTGSPGSKGAPGPKGDPGFPGNPG
GPGRPGLDGAPGSKGDAGFPGGPGPRGPPGPPAFGLQGPPGPPGAPGSMGSPGVPGANGE
KGDRGPPGSSFPGLQGDRGSPGFPGPPGQAGPPGGPGLPGQDGLPGLPGPKGDIGGMGGP
GPAGTPGNPGRQGFPGPKGDDGVPGRPGSPGFPGSKGDKGDPGIPGPPGIVPPAGLFKGQ
KGESGVPGFSGPPGPKGIPGIPGDSGLPGQDGRPGLPGPPGPKGDPGIPGAPGSPGAQGP
KGSMGEMGLPGISGNKGISGQPGRPGQPGTPGTAGFPGPKGDPGSPGFGLPGTPGPKGEP
GPQGFSGNPGQKGQPGLSGSPGFPGSPGPKGDPGLPGFQGAPGNPGPKGLDGAPGTPGPS
GASGRPGDPGRPGLPGLPGDKGLAGRDGIPGPPGQKGDPGAPGLGGPGPPGFPGTPGPKG
DPGFPGPAGSTGFPGPKGDPGFPGVPGQSGPAGPPGPPGLPLQGPKGIQGPPGAPGRAGS
AGPAGPPGSEGPRGPPGSGGVKGEKGMPGVPGIPGAPGQKGDYGPPGFPGTPGNPGPSGL
KGDTGPEGVPGFPGPKGQPGPPGSNGGPGERGDPGTPGSRGDPGYAPEPIVLKGERGPPG
TPGRPGLQGPTGPVGLQGLPGSPGEPGDPGPIGPAGFTGPPGRKGDTGPSGQPGSRGYPG
PPGPEGIQGPPGIAGSSSAAHGFLITRHSQNTNVPLCPENTRLIYEGYSLLYVQGNERAH
GQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPQSMPMNMAPITGENIKP
FISRCSVCETPAMVIALHSQTIQLPVCPNNWEVLWIGYSFMMHTSAGAEGSGQALASPGS
CLEDFRSSPFIECHGRGTCNYYSNSYSFWLATVDTNEMFGQPQSETLKPGDLETRVSRCV
VCMKRT
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgaacttacagggtctcggcgcggtgttacttctgttcctcactataagtacagaggtg
cgcaaatccgaggcagcggcatgtcatggttgtgggactggaccaaagtgtgactgcagt
ggggtgaaaggacagaagggtgagcgagggtttccaggtttaacgggccagctaggtgtt
ccaggtttccagggaccagaggggccgattggacctcgtggagagaagggtgatgatgga
cctaacgggccgagtgggcctaaaggaataagaggaccttctggattaccaggcttccca
ggaacaccaggaatcccaggtatcccaggacaggatggccccccaggacccaaaggaatt
tcaggctgtaatggaaccaagggtgaaagaggattcccaggaaatccaggtcttccaggt
ttagtgggttcaccaggtccaccgggttctataggaccaaagggggagcctggggacatc
atagaaattagtcgcctttcagaaaacggggatcctggcattgggggtttacctggctcc
aggggtgatcctggacccccgggtcttccaggccctgttggtcctcctggtccacgaggg
tacgaggggcgtctaggccctcctggtccaccagggccaaagggaaacatgggattgaac
ttccaaggacccaaaggagagaagggtgaccgtggattacaaggacctcctgggccacca
gggcaggtgggcgaagtgtcaggctcacctgatacagtcattcaacaaggagaaaagggt
gatcgcggccaacctggaaatcctggttttccaggtccccctggaccccctggtccacaa
gggggccaaaaaggtgagaaaggagaatctggggagcctggaaagaggggaaaacctggc
aaagatggtgaacaaggcctgcctggatatccaggtgataaaggagaaccaggtcctcct
ggtctgtcggggcgagatggtgccagaggtgagaaaggtgatcgaggccctcctggaccc
ccatcatacagggatgggcaattcataggcataggtggaacaggaccgaaaggagacagg
ggcgagccaggattccctggccctaaaggagacagaggactgccaggtattcaggggcca
cctggtccatcaggtcctacaggaattggaggtccaggtcctcctggtcaaccaggttta
cctggagagagaggagaaaaaggtgatgagggcgagcctggaatctccttccctggacaa
cctgggaaaacaggtccaccaggtccccaaggagtcccaggacctcctggtcccccagca
atatttaatggcgaccaagaatgtaatcgtggtcctcctggtcctccaggcctgcagggg
gagcaaggatttacaggagaaataggacagaaaggtcaaaaaggagagacatgtgtcaat
tgtttcagtaatggaaaccctgtcccaggacccccagggtttccaggtcctccgggaaat
ccaggtgcacctggattgcctggaacgaaaggagacagaggatacccgggagggccaggg
ctaatgggaccacctggaataccaggacctcagggtctccctggagtccctggagagaag
ggcgacccaggcgatgcaccctctgttccgggtgtgaaaggagaaaagggagacacaggc
tttcctggcccttcaggtctccccggactcgatggaagacctggtcgtgatggagttccc
ggtcccccaggcctcagaggaccacctggttctgcattgatgaaaggttcacaaggtcca
tctggtgaacctggcttgccaggacctccaggagacaggggtctgccgggtcccccagga
tttggtcctcagggacctcctggagagaaaggtatccagggtgtttcaggacgaccaggg
ggccctggagcaccaggtcagaaaggtgaacctgggttggcagtgtcagataaaggtgaa
cgtgggcccccaggacgcgatggagaaccaggtttgccaggaagtccaggtaatccaggc
ctaccgggacagcctgggttccctggcttacctggatccaaaggagatcctggtcttcct
ggtatcggtttgccaggactccctggtcctaaaggttttgctggtattgctggttcccct
ggtggacctggtattcctggaaggccaggtctggacggactgcctggtcagcctggatta
cctggacccaaaggagaccctggttttggtctacctggacctcaaggccctacaggatca
ccaggcagtaaaggtgctcctggtcctaaaggtgatcctggtttccctggaaaccctggt
ggaccaggtcgtccgggtcttgacggtgctcctggatctaaaggtgatgctggttttccc
ggtggtcctggtccccgtggcccgccagggcccccagcctttggccttcagggcccccct
ggtccccctggagctcctggctctatggggtctcctggagtccctggtgccaatggagag
aaaggagaccgtggccccccaggttcaagttttccagggttgcaaggtgacagaggaagc
ccaggatttcctgggcctcctggtcaagctggtccacctgggggtccaggactacctggt
caagatggcctaccaggactgcccgggcctaaaggagacattggtgggatgggtggtcca
ggacctgcaggtacccctggcaatcctggcagacaaggctttccaggaccaaaaggagat
gatggtgttccaggacgaccaggaagcccaggtttcccaggatcaaagggagacaaaggt
gacccaggcattcctggccctcctggcatagtcccacctgcaggtctttttaagggacaa
aaaggagaatcaggagttccaggttttagcggaccaccaggaccaaagggtattcccggt
atccctggagattctggtctccctgggcaagacggaaggccaggtctaccgggacctcca
ggccccaaaggtgatcctggtattccaggagctccagggtctccaggtgcccaaggaccg
aagggtagcatgggggagatgggattaccaggaatttctggaaataaaggaatctctggc
caaccaggccgacctggccagcctggaaccccaggaacagcagggttcccgggacccaaa
ggtgatcctggctcaccaggatttggattaccgggaactcctgggccaaagggtgaacca
ggccctcaaggattttctggaaaccctggtcagaaaggccagcctggcctttcaggatct
ccaggctttcctggtagccctggaccaaagggtgatccaggactcccaggattccagggt
gcacctggcaatcctggccctaaaggtttggatggtgctccaggcactcctggtcctagt
ggagcgtctggtaggccaggagatcctggacgtcctggattaccaggcctccctggtgat
aaaggtcttgctggacgtgatggtattccaggacctccaggacaaaagggtgacccaggc
gctccaggtctcggtggcccaggcccacccggtttccccggtacaccagggcctaaagga
gaccctggttttccgggtcctgccggtagtactggatttcctggtccaaagggtgatcca
ggatttcctggggttcctggccaaagtggtcctgcaggaccgcctgggcctccaggcctg
cctttgcagggacctaaaggcatccaaggcccacctggtgcccccggaagagctggctcg
gcaggtcctgcaggtcctcctggctctgagggtccccgtgggcctccaggtagtggagga
gtcaaaggtgagaagggcatgcccggagtccctgggatacctggagcaccaggacagaaa
ggagattatggtccccctggctttccaggtactccaggaaatccaggacctagcggtctg
aaaggagatactggacctgaaggtgttcctggattcccgggacctaaaggacagcctggt
cctccaggatctaatggcggcccaggagaacgtggtgaccctggaaccccaggttctcgt
ggtgacccaggctatgctccagaaccaattgttttgaagggggagcgtggtccacctgga
acacctggtcgcccaggcctccaaggtccaacgggtcccgtgggattgcagggtcttcca
ggttcgcctggtgaacctggagacccaggtccaattggacctgcaggatttaccggccca
ccaggaaggaagggagatacaggaccatctggacaaccaggttcacggggttaccccggc
cctcctggtccagaagggattcagggccctccaggcatcgcaggatcatcgtctgccgca
cacggttttctgatcacgcgccacagtcagaacacgaatgtgccattatgtcctgaaaat
acaagactcatctatgaaggctactctttactctatgtgcaaggaaatgagagggcgcac
ggacaggacctgggtacggctggtagttgtctacgtcgtttcagcacgatgccttttatg
ttctgcaacatcaacaatgtctgcaacttcgcttcccgcaatgactactcctattggctg
tccacaccacaatccatgcccatgaacatggcgcccatcactggggagaacatcaaacct
ttcatcagtcggtgctctgtgtgcgaaactccagccatggtgattgctttacacagccag
accattcagttgccagtctgcccgaacaactgggaggtgctctggatcggttactccttc
atgatgcacaccagtgcaggtgctgagggctcaggtcaggctcttgcctctcccggttcc
tgtctggaggacttccgctcgtctccgttcatcgagtgccacggtcgaggcacctgcaat
tattacagcaactcgtacagcttctggctggccactgtggatacgaatgaaatgttcgga
cagccgcagtcagagacactgaaacctggagacttggaaacccgtgtgagccgctgtgtt
gtgtgtatgaagaggacgtaa
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integrated database retrieval system
