Carassius auratus (goldfish): 113106420
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Entry
113106420 CDS
T07313
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113106420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
caua03041
]
113106420
03009 Ribosome biogenesis [BR:
caua03009
]
113106420
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113106420
Spliceosome [BR:
caua03041
]
Complex A
U2 snRNP components
U2 related factors
113106420
Complex B
113106420
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
113106420
Ribosome biogenesis [BR:
caua03009
]
Eukaryotic type
90S particles
Helicases
113106420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Atrophin-1
nSTAND3
Glyco_hydro_98M
SRP54
AAA_25
Flavi_DEAD
DUF3915
AAA_29
AAA_7
T2SSE
Motif
Other DBs
NCBI-GeneID:
113106420
NCBI-ProteinID:
XP_026124109
Ensembl:
ENSCARG00000063047
UniProt:
A0A6P6PT91
LinkDB
All DBs
Position
7:28169091..28206806
Genome browser
AA seq
761 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSSDGKDRDRDRDERSKDRDRDRDRDRDRDRDRDSKASSASL
SSVAPIAGMLSLKQTAMQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKERFNDILNRHQ
SFVLVGETGSGKTTQIPQWCVDMVKALPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLG
QEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMG
VLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEA
AIRTVIQIHMCEEDEGDVLLFLTGQEEIDEACKRIKREIDDLGPDVGDIKIIPLYSTLPP
QQQQRIFEPPPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVE
SLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQL
KKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKM
VIASCDFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAF
KQNHEAVQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRALV
TGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIK
PEWLVKIAPGYYEMSNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcggcataggttggatttaggcgatgattattcgtcgagcaagaagaggtca
tctgacggtaaggaccgtgaccgagatcgggacgagcggtcgaaggatcgggaccgagat
cgtgaccgagatcgcgatcgagaccgggatcgagacagcaaggcgtccagcgcgtccctc
agctccgtcgcgcccatcgccgggatgctctcgctcaagcagacggccatgcagcagcag
atcaaccccttcaccaacctgcctcacacgccgcgcttctacgagatcctcaagaagagg
ctgcagctgcccgtctgggagtacaaggaacgctttaacgacatcctcaaccgccatcag
agcttcgtgctcgttggagagaccggctctggaaagaccacacagatccctcagtggtgt
gtggacatggtgaaggccctcccggggcccaagcgcggcgtggcttgtacacagcctcgt
agggtggcagccatgagcgtggctcagagagtggctgatgaaatggacgtcatgctgggg
caggaggtcggatactccatcagatttgaggactgtagctctgcgaaaaccatactgaaa
tatatgacagacggtatgttgctccgcgaggctatgaacgacccgctgctggagcgatac
ggtgtcattattctggatgaggctcacgagcgcaccttagccacagatatactgatgggc
gtcctcaaagaagtggttcggcagagatccgaccttaaggtcatcgttatgagcgccact
ctggatgctgggaagttccaggtttatttcgacagctgccccttgctgaccattcctggc
cggacgcatcccgtggagatcttctacacgcccgagccagagagggactacctggaagcg
gccattcgcacggtcatccagatccacatgtgtgaggaagatgagggagatgtgctgctc
ttcctcaccggacaggaggaaatcgatgaagcctgcaaacggatcaaacgtgagattgac
gatctcggccctgatgttggcgacatcaaaatcatcccgctgtactccacgcttccacca
cagcaacagcagaggatcttcgagccgcctccaccccgcaaacccagcggagccatcggc
aggaaggttgtggtttctacaaacattgctgagacgtctctgaccatcgatggcgtggtg
tttgtaattgatcctggctttgccaagcaaaaggtgtataaccctcgcattcgagttgag
tcgctgctcgtaacagctattagtaaggcttcggcccagcagagagccggccgtgctgga
cgtacgcgcccaggaaagtgcttccgactctacactgagaaggcctacaagactgagatg
caggacaacacataccctgagatactcaggtcaaatttgggctctgtggtgctacagctc
aagaagcttggtatagatgatctagtgcactttgacttcatggacccaccagctcctgaa
acgctgatgcgagccctggagctgttgaactatctggcggcgctgaatgacgacggtgac
ctgacggagctgggctccatgatggctgagttccctctcgacccccagctcgccaagatg
gtcatcgccagctgcgacttcaactgctccaatgagatcctctccatcaccgcaatgcta
tcagtcccacagtgctttgtgcggcccaccgaagctaagaaggcagccgacgagtccaaa
atgaggttcgcccacatcgacggggaccacctgaccttgctcaacgtctaccacgccttc
aaacagaaccacgaggcggtgcagtggtgctatgataacttcgttaactaccgctcgctg
atgtcagctgataacgtgcggcagcagctctcacgcatcatggaccgcttcaacctgccg
cgacgcagcacagagttcaccagccgagactattacatcaacatccgccgcgctctcgtc
acaggcttcttcatgcaggttgctcacctggagcgcaccggccactatctcacagtgaag
gacaaccaggtggtccagttgcacccttccaccgtactggaccacaagcccgagtgggtt
ctctataacgagtttgtgctgaccaccaagaactacatccgcacctgcactgatatcaaa
cccgaatggctggtgaaaatcgctccaggatactacgaaatgagcaacttccctcaatgc
gaggctaagaggcaactggagcgcatcgtcgctaaacttcaaaccaaggagtactctcaa
tactaa
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