Carassius auratus (goldfish): 113107218
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Entry
113107218 CDS
T07313
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
caua04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113107218
04518 Integrin signaling
113107218
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113107218
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113107218
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113107218
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
113107218
NCBI-ProteinID:
XP_026125355
Ensembl:
ENSCARG00000027133
UniProt:
A0A6P6PZC9
LinkDB
All DBs
Position
8:complement(9343925..9363143)
Genome browser
AA seq
1491 aa
AA seq
DB search
MFRLVDSRTLLLLVATHCVLLSLVRCQQEDDQEDFGSCIQDGEKYADRAVWKPEACRVCV
CDTGAVLCDEVICEDLRDCTNPIIPPGECCPICPVDTDEPNGSPGAKGQKGEPGDIADVV
GPRGPAGPMGPPGEQGPRGELGPKGEKGNPGPRGRDGEPGTPGNPGPPGPPGPHGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEAGEPGPA
GPLGPRGPPGPPGKPGSDGEAGKPGKSGERGPTGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGEAGAAGAKGESGTNGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGQRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVT
GPQGAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GLTGPKGGTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPLGAR
GQPGVMGFPGPKGANGEPGKPGEKGLVGPTGLRGLPGKDGETGASGPPGPAGPAGERGEQ
GQPGPPGFQGLPGPTGASGEPGKPGDQGVPGEGGAAGPTGPRGERGFPGERGGAGPQGIQ
GPRGLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMPGERGVVGIPGSKGDRGDSGEKGPE
GAPGKDGARGLTGPIGPPGPSGPNGAKGETGPIGPIGAPGARGAPGDRGEIGAPGPAGFA
GPPGADGQPGIKGEQGESGQKGEAGSHGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGAT
GFPGAAGRVGSPGPNGNPGPPGPPGASGKDGPKGVRGDAGPPGRAGDAGLRGPPGAPGEK
GEPGEDGPPGADGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSSGDR
GPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGAAGVKGERGNTGPIGAPGAPGAPGAP
GSVGPIGKQGDRGENGPQGPAGPPGPAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGAPGDQGAAGPAGPSGAKGPSGPVGPAGKDGSNGQPGPIGPPGPRGRSGES
GPSGPPGNPGPPGPPGPPGPGIDMSAFAGLAQTEKGPDPLRYMRADEASSSLRQHDVEVD
ATLKSINSQIEDIRSPDGSRKNPARSCRDLKLCHPEWKSGDYWVDPNLGSAADAIKVFCN
METGETCVKPSTPKIPRKNWWSSKSKAQKHVWFGESMNGGFHFSYADSSQTPSTTTIQLN
FLRLLSTEATQTITYHCKNSIAYMDQATGNLKKAVLLQGSNDAEIRAEGNSRFTYGVLED
GCKKHTGQWGKTVIEYKTQKTSRLPIVDIAPIDVGGADQEFGVDVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctactcgtagcaacgcattgcgttttg
ctatcccttgtaagatgtcaacaagaagatgaccaggaagactttggcagctgcatccaa
gatggcgagaagtatgcagaccgtgcagtatggaagccagaagcatgccgtgtgtgtgtg
tgcgatacaggggcagtgctatgtgacgaggtcatctgtgaggacctgagagactgtacc
aatcccatcattccacctggagagtgctgtcccatctgcccagttgacaccgacgaacct
aacgggtcacctggtgcaaagggacagaaaggagaaccaggagatattgcagatgttgta
ggaccaagaggacctgctggaccaatgggacctccaggagagcagggaccacgtggcgag
ttaggacctaagggtgagaagggaaatcctggcccaagagggagagatggcgagcctggt
acacctggaaacccaggaccccctggaccaccaggacctcatggtccccctggacttgga
ggaaactttgctgctcagatggctggaggttttgatgagaaggcaggaggtgctcagatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctcctggccccactgga
gcacctggcccacaaggtttccaaggcaaccctggagaggctggtgaacctggccctgct
ggtcctcttggaccccgtggccctcctggaccccctggaaaacccggaagtgatggtgag
gctggcaaacctggcaagtctggtgagcgtggacccacagggcctcagggagcccgtgga
ttccccggaacccctggccttcctggcatcaagggacacagaggacacccaggtcttgat
ggagctaaaggagaggccggtgctgcaggtgctaagggtgaatctggtactaatggtgag
agtggtgctcctggaccaatgggtccacgtggtctgcccggtgagagaggtcgtcctgga
ccttctggtgctgctggtgcccgcggtaatgatggtctgcctggtcctgctggtccacct
ggacctgttggtcctgctggtgctccaggtttcccaggatcccctggtgctaagggtgaa
gctggtcccactggagctcgtggacctgagggtgcccaaggacaacgtggagaggccggt
acacctggatcacctggacccgccggagcatctggtaaccctggtactgatggtattcct
ggtgccaaaggatctgctggtgcttctggcatcgctggtgcccctggtttcccaggaccc
cgtggcccacctggacctcagggagctactggacctcttgggcctaaaggacaatctgga
gaccctggtatcccaggatttaagggcgaggcaggacccaagggagagcgtggtgttaca
ggacctcagggtgcacctgggccatctggagaggaaggcaagagaggaccaagaggagag
cctggttctgccgggcctctcggacctcctggagaaagaggagctccgggtaaccgtgga
ttccctggtcaggatggtctagcaggagctaagggcgcacctggtgatcgtggtgttcct
ggtttgaccggcccgaaaggaggaactggagatcctggtcgcacaggcgagcctggtctt
cctggagccagaggtctcactgggcgccctggtgatgctggacctcaaggaaaagttgga
ccatctggtgcccctggtgaagatggacgccctggtcctcctgggcctctgggagctcgt
ggtcagcctggagtgatgggattccctggacctaagggagccaatggtgaacctggaaaa
cctggagagaaaggacttgttgggcccactggtcttagaggtttgcctggtaaagatgga
gagactggagcttctggtccacctggccctgctggtccagctggtgagagaggagagcag
ggtcagcctggtccacctggcttccagggtcttccgggacctactggagcttctggagag
cctggtaaacctggtgaccagggtgttcctggagagggtggtgctgctggtcccactgga
ccaagaggtgaacgtggtttccctggtgagagaggaggcgctggccctcagggtatccag
ggaccaagaggacttccaggaactcctggtactgatggacctaagggtgcaattggacca
gctggtgctgctggagctcagggccctcctggtctgcagggcatgcctggtgagagagga
gttgttggaatccctggatctaaaggtgacagaggtgacagtggagagaaaggacctgaa
ggtgctcctggcaaagatggtgcaagaggtttaactggtccaattggtccacctggtcct
tctggtcccaatggcgctaagggtgaaactggtcccattggtccaattggtgctcctggt
gctcgtggtgcccctggcgatcgcggtgagattggtgcacccggacctgctggctttgct
ggacctcctggtgctgatggccagcctggaattaaaggagagcagggcgagtcaggacag
aaaggtgaagctggatctcatggaccccaaggaccatcaggagcacccggcccagtgggt
ccaactggtgttacaggacctaagggagcacgtggagcccaaggagcccctggtgccact
ggtttcccaggagctgcaggaagagttggatcacctggccccaatggtaaccctggtcct
cctggccctccaggtgcctctggtaaagatggtcctaagggagttcgtggtgatgccggt
cccccaggcagagcaggagatgctggactgcgtggacctcctggtgctcctggagagaag
ggagagcctggagaggatggccctcctggtgctgatggtccctccggccctgctggtctt
gctggtcagcgtggtattgttggtttgcctggtcagcgtggtgaaagaggcttcccagga
cttccaggaccctctggtgagcctggcaaacagggagctcctggctcttctggtgaccgt
ggaccccctggccctgttggacctcctggattgactggacctgctggagagactggacgt
gagggtaatcctggatctgatggtccacctggtagagatggtgctgctggtgtgaagggt
gagcgtggtaacactggcccaatcggtgctcctggagctcctggtgcacctggtgctcct
ggttccgttggtccaattggcaaacagggagacagaggagagaatggcccacaaggacct
gctggaccccctggacccgctggagctagaggaatggtgggaccccaaggacctcgtggt
gataagggtgaggcaggagaagctggagaaagaggtcagaagggacacagaggattcacc
ggtctgcagggtcttcctggacctcctggtgctcctggagaccagggtgctgctggacct
gctggaccaagtggcgctaagggaccttcaggacctgttggaccagctggtaaggatggt
tctaatggtcagcctggacctattggaccacctggacctcgtggacgctctggagagtct
ggcccaagtggtccacctggtaatcctggaccccctggccctcctggtcctcctggccct
ggcattgacatgtctgccttcgctgggttggcacagaccgagaagggacctgatcctctg
cgttacatgcgtgctgatgaggcctccagctctcttagacaacatgatgtggaggtggat
gccacactgaaatcaatcaacagccagatcgaggacatccgcagcccagatggctcccgc
aagaaccctgcacgctcctgccgagacctgaaactctgccaccctgaatggaagagcggt
gactactgggtggatcctaaccttggtagcgctgctgatgccatcaaagttttctgcaac
atggagaccggagagacctgtgtgaagcccagcactcccaaaatcccacgcaaaaactgg
tggagcagcaagagcaaggcgcagaagcacgtgtggtttggagagagcatgaacggtgga
ttccacttcagctatgctgatagcagccagactcctagtactaccaccatccagctgaac
ttcctgagactgctgtctactgaggccactcagaccatcacctaccactgcaagaacagc
attgcttacatggaccaagccacaggcaacctgaagaaggccgttctgctgcagggctcc
aatgatgcggagatcagagcagagggcaacagccgctttacatatggagtacttgaggat
ggctgcaagaagcacacaggtcagtggggcaagactgtgattgagtacaaaactcagaag
acatccaggctgcccattgtggacattgctcccatagacgtcggaggagcagatcaggag
tttggagtggacgttggtgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
