Carassius auratus (goldfish): 113107287
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Entry
113107287 CDS
T07313
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
caua04131
]
113107287 (vps13a)
Membrane trafficking [BR:
caua04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
113107287 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
113107287
NCBI-ProteinID:
XP_026125476
Ensembl:
ENSCARG00000028686
UniProt:
A0A6P6PVC2
LinkDB
All DBs
Position
8:complement(11994869..12049667)
Genome browser
AA seq
3230 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLSLGIWGGDAILRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKKLYTQSVEATLDEVYLLIVPTASIKYDAEKEERQLQEARQRELQRIEE
SKQKAAEKENPKAEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPSAPLSFGVSLQ
NLSLQTADQNWKPCLLDEKAKLFFKLVRLDNLFAYWNVNSELYSNHNPEEALRYLKHSVD
IQSTIPQDYHFIFRPISANAKLRMNPRSDVDFSSPKVDLVVNLPEVAVELSRPQYVSILE
LLGSVDMMTRNLPYRKYRPDVAVHTNAHQWWRYVITGVLEVNVKPSLHMWSWKHIRRHRQ
HVKKYREIYKKKITSKKPAESLLKELEETERTLDIFNITMARQQAEMEASKAGFRIYRPG
VQVEEEQSQGWIGWMWSWSGDSSTQTKDVKTGGFDELMTPAEKAKLYAAIGYSETAVNPN
LPKNFENMKINFQLNHLSLSIKESREKPEIIKLSVIDLKAMLTQRPAAQAIKISALLSSF
EVSGLPRGKSAPILLSPRRVEGMKDTTLLNLMFETNPLDASADQRLRIESQPLEIIYDAM
TVNSMSAFFMPPKDLQLDELTNATLMKLEQFRDKTSTGLMYIIETQKVLDLKINLMASYV
IVPENGFYDPKHNLAILDLGHFQMSSQSRADLPQLSASSSTIEDIMSRAYDSFDVQLSSL
QFLYTKAGGDWKRARPLRQSAFHILEPVDLKVVFSRAMVVTDSRMPKFKISGELPLLSLR
ISDDKVRGVLALLSSIPLPESRPATQTRAPQVTPKAYKRVNTPQLTPRRPAIDDLRASII
YGSEEELFFDAPSSPIEDLPFFEASSDSLQGSASDKRLGMVLKDPKKNMTELFLEFQINK
LSIQLCRLSGRQEVSVMHLSIDGLGTELKLRTFDMSSYTFLREICLECSEYLDSEDKNVH
LITTLDNTEEDLLTLEYIKADKNAPDFKAVYKNTEQLIKVNFSSLDVHLHTEALLNSINF
LNNLLPPLKKEAQEEQPVLPKEEEEEEEEANIEDSAVTKKSSNKKSKFEDVVNLHIRADL
SCLKVFIRGEKARISEISIEGLVSEVQMKKKSVEILANLKNIVILDCDKEALYKKAVSIA
DKEVFDFRMVNHVDATEGDAYTDMHIVDTSVTLTVGCIQVIFLNKFVSSILAFINNFQEA
KNALAEVTAQAAEKAATGVLELAERSTRISLDVDIKAPVVFLPQSSVSQNVIVADLGLVT
VKNHFEIVSSPTHTKIPPVMDIMAVALSDLKMYRTTFTDGQFRSEIQLLKPVNMDLSIKR
NLSATWYHSIPDIQINAHLKPMSLILSQEDLTIVLKTLSENLSETSEAPPAPSSSDKGDM
TSTKDSQSSGGNTVVTAAVVEGQKTGKLKNTLKLDFKFDSMTLVLYSPNNEIQLSDSRDE
SLKLAEFTLGTISTAVHMFSDSSMKASLKLTNCLLDDKRQRVKMITSRMMAMRQAREGDV
MVDVSYRQGRDGTVLDTLVQDLYLCASMEFLLTVADVFLKALADGFSGPPKNNKPVSSSK
DPAVAVPVVAKTEMNIVVKNPEIVFVADLTRAEAPALVMTTQCELVMKNEPSGQSMTAAI
SDLKVVACPLLREKREHNVTTVLQPCQVYFQSNQSPTEPQAINLSISSLTLKVSPIIINT
VITIQSALSPAAETPEELESPMPQDLWDRRNLRDLKLWFLEEEEEKVTRSVIPLVPHGES
LKMNIQSICLTLEAGVGHRTVPMLLAKASFKGDVKNWSTLINLHCHLDLEVNYYNEMMGV
WEPLLEPLDDEEKDGFRPWTLAMKMKKKPVSYSGVSDEVDGSVPDYKTVISFTSKDQLNV
TLSKCGLHMLSNLGTAFAEATKQTAECFQTDQAPFVVKNNLGLPVSVLHSEVFRPIGKES
KNRVVELQHGESLNMDYTLTAESSDQFSAMTSLSAKNYIQPTPAGHTTASVIPLIKTGRD
MYSVMHHDSGVTRFFVCQIYTVEGSKYVKIRSPFQIINHFSVAFRVYEGSECLGISLPTE
EFCVPLGSYRAELSLQPVTEGEEQYDRSEGFTYTEVNQKPGECVVKTCHHHGDSAQMLKV
NMVPVPDALMSHSTEEDFDKPIILHLWPTVLLRNLLPYPITFKIKGNGDVPPSELKAGHS
SQIHTAIMDFSILELKLLGYMQQDWESKYSLCSDCEEISFIKFRSLRVDEETEAKPDLDI
AVHVKKEEGQLVVAVHSPYWMVNKTGRLLQYKADDLHRKHAKDYDMPLLFSFKPRNFLQN
NKIRLMISESELSDDFSIDTVGSYGDVKCKGKQKDYMVGVKIDATSFSLTRLVTFLPFYM
LVNRTKHIIRVCEEGLDQWTEARPGQAAVPFWPEKDSKKLRVKVEGSQSSPRAFFFHQPE
NCLLLHLDKTLGGIIVDVNLTEHSAVIRFSDYHDGAAPFLLINHTKDETLHYHQSTSKRK
ASTWLRDERLDLSLSVCEETESLCSSQAEMDDLAPGQAVYYTWAEPTGSRILSWKWAKYK
GELKSEEDQLLDVNKEGKLFVISFYEGLQRVVLFTTELRVFKKIYDNEKMELAEQETCIS
LQNMGISLVNNTNSQEVAFIGITSSDVVWETKPKKRSRWKVLSGKEVTMLEQRYRDYMES
GPVDSIVIDLENDYQVLFAANGVDMRIMQPFDAPLRRNFLPALKVEYSVSTRQKTYRVQI
NRIQIQNQLPGAIFPFVFYPIKPPKSVSMDSEPKPLADVSIITRAAGHSDILRIKYFKVL
IQEMDLRIDLGFLYAILELFAAENASAVTSEQEVELFEKDIEYLKTELNHSSATDTSPIS
LYEYFHISPIKLHLSFSLSTGGEDGNKKERETEVIPVQSLHLLLKSIGATLTDAQDVLFK
LAFFELTFQFRTTQQLQSEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFF
YEPYQGAIQGPEEFMEGMALGVKALVGGAVGGLAGAASRITGAMAKGVAAMTMDEEYQQK
RREAMNKQPSGLREGLTRGGKGLVSGFVSGITGIVTKPIKGAQREGAAGFFKGMGKGLVG
ALTRPTGGIIDMASSTFQGIKRAAETSQDVESLRPPRFIHEDGVIRPYKEREGIGSQMLQ
SVENGRFAKYRYFAHAKVNESDFLMITKRGIFFVTKGTFGQLTCEWQYLFDEFTKAPMVV
EGRRLRIEAKERVKSVFHAKEFGKIINFKTPELAKWVLAKLEDARESLPK
NT seq
9693 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgagtcggtggtggtcgatgtcctgaacaggtttctgggggactatgtggtg
aacctcgacagctcgcagctaagcctcggcatttggggaggtgatgccatattaagaaac
ctcgagataaaagaaaatgccttgagtcaactggacattcctttcaaagtcagagcggga
cacataggtcgtttggagttgaagatcccttggaagaagctgtacactcagtctgtggag
gccacgctggatgaagtttacctgctcatcgtgcctacagctagtataaagtatgacgcg
gagaaggaggagagacagctgcaggaagctcggcagagggagctgcagcggatcgaggag
tccaaacagaaagccgcagaaaaagagaatccaaaggcggagaagcaggatacgtttgtg
gagaaactggttacacaggtgatcaaaaacctgcaggtgaagatctccaacatacacgtc
cgctatgaggatgatgtcaccaatccgagtgctccgctttcattcggagtgtctctgcag
aacctcagtctccagacagctgatcagaattggaaaccatgtcttctggatgagaaagcc
aagctgtttttcaagcttgtacgcctggacaatctgttcgcatactggaacgtgaattca
gagctgtactccaaccacaaccctgaggaggctctgcgatacctgaagcacagtgtcgac
atccagagcactatccctcaggattatcatttcatctttcgtccaatatctgcaaacgcc
aagctgcgcatgaatccgcgctccgatgtggatttctcctcaccgaaagtcgatctagta
gtcaacctccccgaggtggccgttgaactcagccggccacagtacgtcagcatcctggag
ctgttggggtcggtggatatgatgacccgtaacctcccgtacaggaagtatcgcccagat
gtggccgttcacactaatgcacatcagtggtggagatatgtgatcacaggtgttttggag
gtcaatgtcaagcccagccttcacatgtggtcgtggaagcacatccgtcgacatcggcag
catgtgaaaaagtacagagagatctataagaaaaaaatcaccagtaagaagcctgcggag
agtctgctgaaggagcttgaggagactgagagaaccctggatatcttcaacatcacaatg
gcgagacagcaggctgagatggaggcctcaaaggcagggttcaggatataccgtcctggg
gtgcaggtggaggaggaacagtcacagggctggatcggctggatgtggagctggtctgga
gacagcagcacacaaaccaaagatgtcaaaaccggagggtttgatgagctcatgacccca
gcagagaaagccaaactatacgctgccatcggatacagcgagaccgccgtcaatccaaac
ctgccaaaaaattttgaaaatatgaagataaatttccagcttaatcacctgtctctgtcg
atcaaagagagccgagagaagccggagatcatcaaactgtctgtcattgatctgaaagcc
atgctgactcaaagacctgcggcccaagctataaagatctctgctctactgtcatcgttt
gaagtgtcgggtctcccacggggcaagtcggcccccatcctgctgtctccacgtcgtgtg
gaggggatgaaagatacgactctactgaacctcatgtttgagacgaacccactggacgcc
agtgcggaccagagactccgcatcgagtcccagccgctagagatcatctatgatgctatg
acagtgaacagtatgtccgctttcttcatgcctccgaaagacctgcagctggatgaactg
accaatgccaccctcatgaagctggagcagttcagagacaagacctccacaggactcatg
tacatcattgagactcagaaggttctggatctgaagataaacctcatggcttcctatgtc
attgtaccagaaaatggcttctatgaccccaaacacaaccttgctattctggatttaggt
catttccagatgtccagtcagagcagagccgacctgcctcagctgtctgcgagcagcagc
actatagaggacatcatgtctcgagcttacgacagcttcgatgtccagctcagcagctta
cagttcctctacaccaaagcaggtggtgactggaagcgggctcgtcctctgagacagtct
gcgtttcacatcctggagcctgtggacctgaaggtggtcttcagcagagccatggtggtg
acggactcacggatgcccaagtttaagatttccggtgagctccctctgctgtctctgcga
atctctgatgataaagtgcgtggtgtcctggcattgctcagcagcattcctcttcctgag
agtcgcccggccacacagactcgagcgccacaagttacacccaaggcctacaagcgagtg
aacacacctcagctcacccctcgaagaccagccatagatgacctgcgtgcatccatcata
tacggctcagaggaggagttgttcttcgatgcccctagttcaccgattgaggatctgccg
ttctttgaggcctcgtccgactctctgcagggttcagcctctgataagcgtctgggcatg
gtgctcaaagaccccaagaagaacatgaccgagttattcttggaattccagatcaacaag
ctttccattcagctgtgtcgcttgtcaggcagacaggaagtgagcgtcatgcatctgtcc
attgatggattagggacagaactcaaacttcgtacctttgatatgtcatcgtacaccttc
ctgcgtgagatctgcctcgagtgttcagagtacttggattctgaggacaagaacgttcac
cttatcaccactctggataatactgaggaagatctgcttactttggagtatatcaaggcg
gacaaaaatgcaccagattttaaagctgtgtataaaaatacagagcaactaatcaaggtg
aatttctcctcactggatgtgcacctgcacaccgaggcactcctcaactccataaatttc
ctaaataaccttcttccaccactgaagaaagaggcacaagaggagcagcccgtcctaccc
aaggaggaagaggaggaagaagaggaggcaaatatagaggattctgctgttaccaagaaa
tcttccaataagaagtcaaagtttgaggatgtggtgaatttgcacatccgagcagacctc
agctgcctcaaggtcttcattagaggagagaaagccagaatctctgagatcagcatcgag
gggcttgtttctgaagttcagatgaagaagaagtccgtagagattctggctaacctgaag
aacattgtaattctggattgtgacaaagaggcactatataaaaaggcagtgtccatcgcg
gataaggaggtgtttgatttccgcatggtgaaccatgtggatgcaacagagggcgatgcc
tacacagacatgcacattgtggacactagtgtaactttgactgtgggctgcattcaggtt
atcttcctcaacaagtttgtgtcctcaatcctggcatttattaataatttccaagaggct
aaaaatgcattggcagaggtgacagcccaggcagcagagaaagcagccacaggggttttg
gagctggcagagagaagtacacgtatctccctggatgtagacatcaaagctccggttgtt
ttcctcccacagtcctctgtttcccaaaatgtaattgtggcagatctgggtttagtgact
gtaaagaaccactttgaaattgtctcctcgccaactcacaccaagatcccccctgtcatg
gacatcatggctgtggcactgagtgatcttaaaatgtacaggaccacttttactgatgga
cagtttaggagtgagattcagttactcaaaccagtcaacatggacctgtcaatcaaacgc
aatctttctgccacctggtatcacagcatacctgacatccagattaatgcacacctcaaa
cccatgagtctaatcttgagtcaggaggacctaactatagtgctgaagactctaagtgag
aatctgtctgagacttctgaagctcctccagctccttccagctctgataaaggagacatg
acttctaccaaggattctcagagttctggagggaacactgttgtgaccgcagcagtggtg
gagggccagaaaacaggcaaactaaagaacactctgaaactggacttcaagtttgactcc
atgacactggttctgtacagcccaaacaacgagatccagttatcagactcccgtgatgag
agtttgaagttggcagagttcacactgggcaccatctccaccgctgtgcacatgttctct
gacagctccatgaaagcctccctcaaacttacaaactgtctgctggatgacaagagacag
agggtgaaaatgatcacatccaggatgatggcgatgcgtcaggccagggaaggggatgtg
atggtagacgtcagttatagacaaggccgggacggcaccgtgctggacaccctggttcag
gacctctatctgtgtgccagcatggagttcctgctcacagtagctgatgtctttcttaaa
gctttggcagatggcttctctggtccccctaaaaacaacaaacctgttagttcatctaaa
gacccagcggttgctgtgccagtggttgccaaaactgagatgaacattgtggtaaaaaat
cctgagatcgttttcgtggccgacctcacacgtgctgaagctccggctctcgttatgacg
acgcagtgtgagctggtgatgaagaacgagcccagcggtcagtcaatgactgctgcaatt
tcagacctgaaggtggtggcatgtcctctcctgcgagagaagcgggagcacaatgtgacg
acggtgcttcaaccctgtcaggtgtacttccaaagcaaccagtcgcctaccgagcctcag
gccatcaatctgtccatcagctcgctcacgctcaaggtgtctcccatcatcataaacaca
gttatcaccattcagtcagcgctgagccctgcagccgagacccctgaggagctggagagt
cctatgccccaggatctgtgggatcgtcgcaacctgcgagacctaaagctctggttcctg
gaggaggaagaagagaaagtcacccggtctgtcattccactcgttcctcatggagagtct
ctgaaaatgaacatccagtccatctgcctgacgttggaggccggtgtgggccatcgtact
gtgcccatgctgctggccaaagcctcgttcaagggagacgtgaaaaactggagtactctc
attaacctgcactgtcacctggacctggaggtgaactattataatgagatgatgggtgta
tgggaaccacttttggagccgctggacgatgaggaaaaagatggcttcagaccatggact
ctagcaatgaagatgaagaagaagccagtatcatattctggagtatctgatgaggtggac
ggtagtgtgcctgactataaaacggtcatcagcttcaccagtaaagaccagctcaacgtc
accctctccaagtgtggcctccacatgctcagcaatctaggaacggcttttgcagaggcc
acgaagcagaccgctgagtgctttcaaacagaccaggctccgtttgtggtgaagaataat
ttgggtttgccagtatcagtgctgcacagtgaagtgtttagacctatcggtaaagagtcc
aaaaatcgagtggtggagctccagcatggagagagcctgaatatggactacaccctcact
gctgagtccagtgaccagttctcagccatgacaagcctcagtgccaaaaactacatacag
cccactccagctggccacactactgcaagtgtgattccactaatcaaaacaggacgggac
atgtacagcgtcatgcaccatgactctggtgtcacacgcttctttgtctgtcagatttac
accgtcgagggaagcaaatatgtcaagattcgctctcctttccagatcatcaatcacttt
tcggtggctttccgtgtttatgagggatctgagtgtctgggcatctctttgcctacagag
gagttctgtgtgcctctgggttcctacagagctgaactgagcctgcagcctgtaaccgaa
ggcgaggagcagtacgaccgctccgagggtttcacttacactgaggtgaatcagaaacct
ggagagtgtgtggtgaaaacctgccatcatcatggagatagtgcccagatgctgaaggtc
aacatggttcctgtcccagacgctttaatgtcacacagcactgaggaggattttgacaag
cccatcattctgcacctgtggcccactgttctcctccgaaacctcctgccataccccatc
accttcaagataaagggcaatggagatgtccccccttctgaactgaaagcaggccactcc
tcccagatccacacggcgatcatggatttctccattctggagctgaagctgctgggatac
atgcagcaggactgggagtccaagtacagtctgtgcagcgactgtgaagagatcagcttc
atcaaattccgctcgctgcgagtggacgaggagacggaggccaagccggatctggacatc
gctgtccatgttaagaaggaggagggtcagctggtggtggccgtccactccccgtactgg
atggtgaataagacgggcagactgctgcagtacaaggcagatgatcttcatcgcaaacat
gcaaaggactacgacatgcccctcctgttctctttcaagccacgcaactttctgcagaac
aacaagattcgcttgatgatttcagagagtgaattgtcagatgatttctccatcgacact
gttgggagttatggtgatgtcaagtgcaaagggaagcagaaggattacatggtgggagtg
aagatagatgcaaccagtttcagtttgacgcggttggtgacgttcctgcccttctacatg
ctggtgaacagaaccaagcacataatccgagtctgtgaggaaggtctggatcagtggaca
gaggcccgacccggacaggctgctgttccattctggccagaaaaagactcaaagaaactc
agagtcaaagtggagggcagtcaatcctcaccacgggcatttttcttccaccagccagag
aactgcctcctgctgcatctggacaaaaccttgggtggtattattgtggatgtgaatctg
acagaacattctgccgtgatccgcttctctgattaccacgatggtgccgctccattcctc
ctcatcaaccacactaaagatgagacgctacattaccaccagagcaccagtaagcggaaa
gcttctacttggcttcgggatgagagattggatctctctttatcagtctgtgaagagact
gaatccctctgcagctctcaggcagaaatggatgatctggctccaggtcaggcggtgtac
tacacctgggccgagcccaccggctcaaggatactgagctggaaatgggccaaatacaaa
ggagagctcaagagtgaagaggaccagttattggatgtgaacaaggaggggaaattgttt
gttatctcgttttatgaaggcctccagcgtgtggtgcttttcaccaccgagctgcgtgtc
ttcaagaagatttacgataacgagaaaatggagctggctgaacaggaaacctgcatctcg
ttacagaacatgggcatttcactggtcaacaacaccaacagccaggaagtggccttcatt
ggcatcaccagttctgatgtggtgtgggaaaccaagcccaagaagcgcagccggtggaag
gttttgagtggtaaagaggtgacgatgttggagcagcgctacagagattatatggagagc
gggccagtggacagcatcgtcattgacctagagaacgactaccaggtgttgtttgctgct
aacggggtggacatgaggataatgcagccgtttgacgcgccgctcaggaggaacttcctg
ccagcactgaaggtggagtacagtgtctccacccgccagaagacctacagagtccagatc
aacaggattcagatccaaaatcagttgcctggagccatcttcccatttgtgttctacccc
atcaaacctcccaaatcagtcagcatggactcagagcccaaaccactcgctgatgtcagc
atcatcaccagagcagccggacattcagacattcttcgcatcaagtattttaaagtgttg
attcaggagatggacctgcggatagatctagggttcctgtatgccatacttgagctcttt
gctgctgagaacgccagtgctgtcacttctgaacaggaggtggagttgtttgagaaggac
attgagtacctgaagactgagttgaatcacagttcagcgacggacacgtcacccatcagc
ctgtacgagtacttccacatctcgcccatcaagcttcacttgagtttctctctgagcacc
ggtggtgaagacgggaataagaaagagcgcgagacagaggtcattcccgttcagtctctc
cacctcctgctgaagagcattggagcaacactcactgacgctcaggacgtcctcttcaaa
cttgcgttttttgagctgacgttccagttccgcaccactcagcagctgcagtcggaggtc
atccgccattattccaaacaggctatcaagcagatgtatgttctggttttgggtttagat
gtcctcgggaatccattcggactgatccgcggtctgtctgaaggcgtcgaggccttcttt
tatgagccttatcagggtgccatacagggaccagaggagtttatggagggcatggcactc
ggtgtgaaggctctggttggaggagctgtgggcggtctggctggagcggcgtctcggatc
acgggagcgatggctaaaggtgtagctgctatgaccatggatgaggagtatcagcagaag
agacgtgaggccatgaataagcagcccagtggactgagagaaggcctgacacgaggaggg
aagggactcgtctctgggtttgtgagcggcatcacaggcattgtgactaaacccattaaa
ggagctcagagggaaggagcggcaggtttctttaaggggatgggcaaaggtttggtcgga
gctctgacccgaccaacagggggcatcatagacatggccagcagcaccttccaaggcatc
aaaagagctgcagagacgtctcaggatgtggagagtttacgtcctcctcgtttcatccat
gaggatggagtcatccggccgtataaggagagagagggcataggcagccagatgctgcag
agtgttgaaaatggacggtttgccaagtacagatactttgctcatgctaaggtgaatgaa
tccgatttcctgatgatcactaaaagggggatattttttgtgactaaggggacatttggg
cagctgacgtgtgagtggcagtacctgtttgatgagtttaccaaagcgcccatggtcgtg
gagggcaggagactgcgcatagaagcgaaggagcgagtcaaatcagtgtttcatgccaaa
gagtttgggaagatcatcaatttcaaaactccagaactagcaaagtgggttcttgccaag
ctggaagatgccagggaaagtctgccgaagtaa
DBGET
integrated database retrieval system
