Carassius auratus (goldfish): 113107325
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Entry
113107325 CDS
T07313
Name
(RefSeq) embryonic polyadenylate-binding protein B-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113107325
09123 Folding, sorting and degradation
03018 RNA degradation
113107325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113107325
03041 Spliceosome [BR:
caua03041
]
113107325
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113107325
mRNA cycle factors
Stress granule specific factors
113107325
Spliceosome [BR:
caua03041
]
Complex C
Other components
Complex C specific factors
113107325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_occluded
RBD_RDR6
Cas_Cas2CT1978
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
113107325
NCBI-ProteinID:
XP_026125530
Ensembl:
ENSCARG00000017880
UniProt:
A0A6P6PXM2
LinkDB
All DBs
Position
8:complement(13054066..13082879)
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AA seq
625 aa
AA seq
DB search
MNSSGPAYPLASLYVGDLHPDITEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQ
QPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGAKAMEFTNVYIKNFSEDIDREKLKGIFSEFGKTLSVCVMTDESGQSRGFGFVNFES
HGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKN
LDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLASIRAIPSPAIPTTYQQSSGYYMTSVPQHQVRSF
YNTVPNLRPVPRWTTQAPRTQAPFTAQFVRQAVPRRPSTTISTVRQASTQVPHIVHNTQR
MANIGTQTAGGRTAGAGAVVRGVSQYKYSAGVRNVQQVISAPAPVVHQVVPTAEPAVHVR
GQEPLTASILAVAPLKEQKQLLGERLYPLIQALHPTLAGKITGMLLEIDNSELLHMLEAP
ESLHSKVEEAVAVLQAHQAKELSAK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaatagcagtggaccagcatacccattagcctctctttatgtcggtgaccttcatcct
gatatcaccgaggccatgctgtaccagaagttttctcctgctggtcagatcatgtccatc
cgtgtgtgccgtgatgtcattacacggagatccctaggatatgcttacatcaatttccag
cagcctgctgatgcggaatgtgctcttgacacaatgaactatgaagtcatcaagggtcgt
ccaatcaggatcatgtggtcacagcgagatccaggtctgagaaagtctggtgtgggaaac
atcttcatcaagaacatggatgagtctattgacaacaaggctctctatgacaccttttct
gcctttggtaacatcttgtcatgcaaggtggtttgtgatgagaatggctcaaaaggttat
gggtttgtgcactttgagactcaagaagcagccaacagagccattgagaccatgaatggc
atgcttctgaatgatcgcaaagtttttgtagggcattttaagtctcgcaaggagcgtgag
gccgagtttggcgctaaagccatggagttcaccaatgtgtatattaagaacttcagtgaa
gatattgaccgtgagaaactgaagggcatcttctctgaatttggtaagacccttagcgtg
tgtgtgatgacggatgaaagcggacagtctcgtggctttggatttgtcaactttgaaagc
cacggagatgcaaggagggcagtaactgagatgaacggcaaagagctgaatggcagagta
ctgtatgtgggcagagctcagaaaagactggagaggcagggagaactcaagcgcaagttt
gagcaaataaagcaggagcgcatacaacgctaccagggagtaaatctctatgtgaaaaat
ctagatgacagcattgatgatgagaagctgaggaaagagtttgctccttatggaaccatc
accagtgcaaaggtgatgacagatggaggccacagtagaggctttggctttgtgtgtttt
tcctctcccgaagaggccacgaaggcagtgactgagatgaatggccgtatcgttagcact
aaaccactatatgtggctcttgcccagagaaaagaggagcgaaaggctatcctcaccaat
cagtacatgcagagattagccagcattcgtgccattcccagccctgccatacccaccacc
taccagcagagctctggctactacatgacctctgttccgcaacatcaggttcgctctttt
tacaatactgtaccaaacctgcggcctgtgccacgctggaccactcaggctcctagaact
caagctccattcacagctcagtttgtaagacaagcagtgccccgcaggccctccaccacc
atcagcacagtccgccaggcctccactcaggttcctcacattgttcacaacacccagcga
atggccaacattggcacgcagactgcaggtgggagaactgcaggagcgggggctgtagtc
agaggagtcagtcaatacaagtactcagcaggtgtccgaaatgtgcagcaggtcatcagt
gctccagctcctgtcgtccaccaggtagtaccaactgcagagccggcggttcatgtgaga
ggccaggagccccttactgcctcaatactggcggttgcacccttgaaagagcagaaacaa
ctcctgggcgagcggctgtatccacttatccaggccttgcatcctactcttgctggaaag
atcacaggcatgttgctggagatcgacaactctgaactactgcacatgctcgaggctcca
gaatccctgcactccaaggttgaagaggcagtagctgtgcttcaggctcatcaagccaag
gaactgtcagcaaaatga
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