Carassius auratus (goldfish): 113108248
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Entry
113108248 CDS
T07313
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04622
RIG-I-like receptor signaling pathway
caua05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
113108248 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
113108248 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
caua04054
]
113108248 (ifih1)
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113108248 (ifih1)
Pattern recognition receptors [BR:
caua04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
113108248 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
SNF2-rel_dom
CARD
DUF3638
DUF3456
AAA_22
AAA_19
nSTAND3
Motif
Other DBs
NCBI-GeneID:
113108248
NCBI-ProteinID:
XP_026126943
Ensembl:
ENSCARG00000001475
UniProt:
A0A6P6Q0F2
LinkDB
All DBs
Position
9:complement(6789051..6819617)
Genome browser
AA seq
986 aa
AA seq
DB search
MSCDQDAETRHILDCFKDRLKRLIQVEPLLDLLHFLEPDRKDRIKAKFREEGNISAAALL
IDEIIHSKNCEQGWSRELITALETVGCKHAAKYVLNSPPEPTEETENDSCVRLIDLLQLT
LVNMKTADVCAHCRALELLTHEDQENILKLTENQGNIGGARLLLKRLVKNEAGWFSKFLQ
ALEDTEHHELVRELRGEPCNEDEAMSVETVEEGEQSCSGSTVETNMSVLSANSSLLSEDL
DSSLDSSGLGTCADTEEVDIYKEGEQEDVTEDDNPSEECKRDIVLRDYQMEVARPALEEK
NIIICLPTGSGKTRVAVYITKKHLEKRKQMGQPGKVVVLVNKVPLVEQHYKAEFGRFLKH
QYSVERVSGASQLKISFPQIIEQNDIIICTAQILENSLAQAKNGDEDRIKLSQFTLMVID
ECHHTKKGGVYNHIMIRYLKQKHQNQLLKKQEKSPVALPQILGLTASPGVGGAMSQQRAE
EHILQICANLDAFTIKTKTFKEEEAKTPFKRIARAEERKEDPFGDVIKKIMNEIHEHADL
KPLCEPGIQNYEQWVVQKEQNAAKEENQKVRVCAEHLRQYNEALHQSNTIRMSDAFRFLD
KYHNEELKTKSIPDEEGTVTITDTERFLFTLFQDNKAKLQELMGKPQYENNNLAQLKTNI
LKEFSTRERARGIIFTRTRLSAIALCQWIQENPKFDEVGVSASYLIGGGDQSVVKPMTAA
EQKDVLNKFRDGQINLLIATTVAEEGLDIAECNFVIRYCLVTNEIAMIQARGRGRAEDSS
YTLVAEAGSGVAERESVNEYREKMMSRAIAKVCEMNRPDYEKKIREFQMQAIMEEKVKIK
KKLQKGMMKEPPSKISLSCRQCSVFVCSGEDIEKIENMHHVNVTPQFSKLITVRENASLQ
ERLLDYETNGVIACKKCGQQWGSMMLYKSIECPCLHIKNFVVTYGSKKKTFSKWSDLPIK
FPAFDYTQHADLLVEDSGEEEDMETE
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgagctgcgatcaggacgcagagacgcgacacattctggactgtttcaaagacagactg
aagcgactcattcaagtcgagccacttctggatctgttgcatttcctcgaaccggatcga
aaggacagaattaaagccaagtttcgtgaggaggggaacataagcgccgcggcacttctg
atcgacgagattattcactcgaaaaactgcgagcagggatggtcgagagagctgatcacc
gcgctggaaaccgtcgggtgcaaacacgccgcgaagtacgtgttgaacagcccaccggag
cccacggaggagaccgagaacgacagctgcgtccggctgatcgacctcctgcagctcacg
ctggtcaacatgaagaccgcggacgtgtgcgcgcactgccgcgcgctggagctcctgacg
cacgaggaccaggagaatattctgaagctcacagagaatcaggggaacataggtggcgct
cggctgctcctcaaaaggctggtgaaaaatgaagctggctggttttccaaattccttcag
gctctggaggacacggagcaccacgagctggtgcgcgagctgcgaggagagccgtgtaac
gaggacgaagccatgtcagtggagactgttgaggagggtgaacagtcatgctcgggttcc
acagtggagacaaacatgtctgttctctcagcgaacagctcgcttctgtcagaggatctg
gacagcagtctggacagcagcggtctaggtacatgtgctgacactgaagaggtcgacatt
tacaaagaaggtgagcaggaagatgtcacagaggatgataatccatcagaggaatgcaag
agggatattgtgctgcgtgactatcagatggaggtggccagaccagctctagaggagaag
aacatcatcatctgcctccctacaggaagtgggaagaccagagttgctgtgtatatcaca
aaaaaacatttggagaagaggaagcagatgggacaaccggggaaagttgttgttctggtc
aacaaggttcccctggtggagcagcactacaaggccgagtttgggcggtttctgaagcac
cagtactcagtggagcgggtcagcggagcctcgcagctcaagatctccttcccacaaatc
atcgagcaaaacgacatcatcatctgcacagcacagattctggaaaactctttggcccaa
gccaagaacggcgatgaggacaggatcaaattatcgcagttcactctgatggttattgac
gaatgccatcacacgaagaagggcggtgtgtataaccacatcatgattcgctacctgaaa
caaaaacaccagaaccagctcctgaagaagcaggagaagagtccagtcgcgctccctcag
attctgggtctgacggcttcacctggtgtgggaggagccatgagccagcagagagcggag
gaacacattctccagatctgtgcaaacttggacgccttcacaataaaaacaaagactttt
aaagaagaggaggccaaaacaccattcaaaaggattgcaagagcagaagagaggaaggag
gacccgtttggagacgtgatcaagaagataatgaatgagatccatgagcatgcggacctg
aagcccctctgtgagcccggtatacaaaattacgaacagtgggtcgtacagaaagagcag
aatgctgctaaggaggagaatcagaaggtgcgtgtgtgcgccgaacacctccgccaatac
aacgaggctcttcatcagagcaacaccatacgcatgtcagacgccttccgcttcctcgac
aaatatcacaacgaagagctcaagaccaaatccatccccgatgaggaaggcactgttacc
atcacagacacggagcgattcctcttcactttgttccaagacaataaagcaaagctgcag
gagctgatgggaaagccacagtatgaaaacaacaatctggcccagctgaaaaccaacatc
ctgaaggaattcagcaccagagagagagcgcgaggcatcatattcacccggacccgcctc
agcgccatcgctctctgccagtggattcaagaaaaccccaagtttgatgaagtgggagtc
agcgccagctatctgatcggaggaggagatcagagcgtggtgaaacccatgactgctgca
gagcagaaggacgtgctgaacaagtttcgtgatggccagatcaatctgctaatagccacc
actgtagcagaagagggtctggacatcgccgaatgtaatttcgtcatacgctattgcctt
gtgaccaatgagatcgccatgattcaggcccgtggtcgaggaagagcggaggacagtagt
tacacgctggtggcggaggcaggatctggggtagcagagagagagagcgttaacgaatac
cgggagaaaatgatgagcagagccatcgccaaagtctgcgagatgaatcgacccgactat
gagaagaaaatcagagagtttcagatgcaggccataatggaggagaaggtgaagataaag
aagaaactgcagaagggaatgatgaaagaaccgccatctaaaatcagcctgagctgcagg
cagtgcagtgtgttcgtgtgctcgggagaagacattgagaagatcgagaacatgcaccat
gtcaatgtgactccgcaatttagtaagctgattacggtccgagagaatgcttcactacag
gagagactcctggactatgagaccaatggagtcattgcgtgcaaaaaatgtggacagcaa
tggggctcaatgatgctgtataagagcattgagtgtccctgcctccatatcaagaacttt
gtggtcacatacggctccaagaagaagacattcagcaaatggagcgacttgcccattaag
ttccccgcgtttgactacactcaacacgctgatctccttgtagaggactcgggggaagaa
gaagacatggaaactgaataa
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