KEGG   Carassius auratus (goldfish): 113108636
Entry
113108636         CDS       T07313                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113108636
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:caua03041]
    113108636
   03036 Chromosome and associated proteins [BR:caua03036]
    113108636
Spliceosome [BR:caua03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    113108636
 Complex B
    113108636
 Complex C
   U2 SnRNP specific factors
    113108636
Chromosome and associated proteins [BR:caua03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    113108636
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298
Other DBs
NCBI-GeneID: 113108636
NCBI-ProteinID: XP_026127658
Ensembl: ENSCARG00000052330
UniProt: A0A6P6Q2H1
LinkDB
Position
9:complement(19112061..19125289)
AA seq 1311 aa
MAQIAKTHDDIEAQILEIQGMKAALVEGAEQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEDDDDEDSSTSLLGPKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKISDREDEY
KKRRQKMIISPERHDPFADGGKTPDPKMQVRTYMDVMKEQHLSKEEREIRLQMLEKAKSG
ELKAVNGSAASQAAAAKRKRRWDQTADHTPSNTTPKKVSSWDQADGGPETPGHTPSNSRW
DETPGRAKGSETPGATPSTRMWEPTPSHTPAGAATPGRDTPGHATPGHGGATSSVRKNRW
DETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPVSQMGSSTPLL
TPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPEGYK
VLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQTEDRSMKQVNDQPSGNLPFLKPDDIQ
YFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFN
QILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
REIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCK
SKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALA
EAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLIL
IREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQL
VDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLI
DGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAAD
LISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPI
KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAI
RRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALM
NEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQ
HMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQG
LFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNSYVRYELEYFL
NT seq 3936 nt   +upstreamnt  +downstreamnt
atggcgcagatcgccaaaacacatgacgacattgaggctcagatcctggaaatccagggg
atgaaagctgccctggtggagggagctgagcaaggggttggacttgattccactggatat
tatgaccaggagatctacggcggcagtgacagccgctttgctggatatgtgacatcaatt
gctgccaacgagcaggaagatgatgatgatgaagattcatccacaagtctgcttggaccg
aagaaaccaggatatcatgcaccggttgcaatactcaattccattcctcagtcagatgag
cagtatgatccctttgctgaacacagaccacagaagatttcagatcgtgaggacgagtac
aagaaacgcagacaaaagatgatcatctccccagagcgccacgacccatttgctgatggg
ggcaaaacgccggaccccaagatgcaggtcaggacatacatggatgttatgaaggagcag
catctgtccaaagaggagagagagatcaggctgcagatgttagagaaagcaaaatctgga
gagctgaaagcagtgaacggctctgctgcatcccaggctgctgcggccaaacgcaaacga
cgctgggaccagacggctgaccatacccccagcaacaccacacccaaaaaagtctccagc
tgggaccaggcagatggaggtcctgaaacaccagggcacacaccttccaacagtcgctgg
gatgagacacctggtcgtgccaaaggtagcgagaccccaggagctactccgagcacccgt
atgtgggaacccacaccaagccacaccccagctggagctgccacgccaggtcgagacacc
cctggacatgccactcctggccacggaggggccacttccagtgtgcgcaagaaccgctgg
gatgagacaccaaagacagagagagaaacacctggtcatggaagtggctgggctgagact
ccacgtacagacagaggagatgaatcagtgggtgagacgcccaccccaggagcaagcaag
aggaagtcaagatgggatgaaacaccagtcagtcagatgggctcttcaactcctctgctc
acccctggaaaaacccctctgggcacacctgctatgaatatggccacacccactccaggt
cacctgatgagcatgactccagagcagctgcaggcttggcgctgggagcgcgagattgac
gagaggaatcgtccattgacggatgaggaacttgatgccatgtttccagaaggatacaaa
gtactgccgccaccagcaggttatgtacccatccgcaccccagcccgtaagttagctgcc
acgcccacccccatcggaggcatgactggcttccacatgcaaacagaggacagatcaatg
aaacaagtcaacgatcagccctctggaaacctgcccttcctcaagccagatgacatccag
tactttgataaactgctggttgaagttgatgagtccaccctcagtccagaagaacagaag
gagcgtaagatcatgaagctgctcctcaagatcaagaatggaacacctcctatgaggaag
gctgctcttcgtcaaatcacagacaaagccagagagtttggtgccggacccctctttaac
cagatcctgccgttgttgatgtctcctacactggaggaccaggagcgtcatctcttggtg
aaagtcattgatcgtatcctctacaaacttgatgacttggttcgaccatatgtccacaag
attcttgtggtgattgagcccttgctgattgatgaagattactatgctagagtagagggt
agagagatcatctccaacttggcaaaggctgctggtctggccactatgatctctaccatg
aggcctgatattgacaacatggatgagtatgtgagaaacaccacagctcgtgctttcgct
gttgtagcgtctgccctgggcattccatctctcctgcctttcctcaaggctgtttgcaag
agcaagaaatcctggcaggctcgtcacacgggtatcaagatcgtacagcagatcgctatt
ctcatgggctgtgctatcctgccacatctccgcagcttggtggagattatcgagcatggt
ctcgtggatgagcagcagaaagtgcgaaccattagtgctctggctatcgctgccctggct
gaagctgctacaccatacggtatcgagtcctttgattctgtgctgaaacccctttggaaa
ggtatccggcaacaccgaggcaagggtcttgctgccttcttgaaagccatcggatacttg
attcctcttatggatgctgaatatgccaactattacaccagagaagtgatgcttatcctt
attagagagttccagtcacctgatgaggaaatgaagaagattgtcctgaaggtggtgaag
cagtgctgtggcacagatggtgtggaagccaattacattaaaacagagattttgcccccc
ttcttcaaacatttctggcagcacaggatggcgttggataggcgcaactacagacagtta
gtggacactacagtggagctggccaataaggtaggggccgctgagattatctcccgtatc
gtggatgacttgaaggatgaagctgagcagtacaggaaaatggtcatggagaccattgag
aaaattatgggcaaccttggtgccgctgacatcgatcacaaactggaggagcagcttatt
gatggaatcctgtacgccttccaggaacagaccactgaggactctgtgatgctaaatggc
tttggtacggtggtaaatgccctgggtaagagagttaaaccatacttgcctcagatctgt
ggtacagtgctgtggcgtctcaacaacaaatccgccaaagtccgtcaacaggctgctgac
ctgatttctcgcacagcggtggtcatgaagacatgtcaagaggaaaagcttatgggccat
ttgggtgtggtgttgtatgagtatctgggagaagaatacccagaagtgctgggtagcatt
cttggagcccttaaagctattgtcaatgttattggtatgcacaagatgacaccacctatc
aaagacttgcttccaaggttgactccaatcttgaagaaccgacatgagaaggtgcaggag
aactgcattgatttagtgggcagaatcgctgataggggtgcagagtatgtgtctgccagg
gaatggatgcgcatctgttttgaattgctagagttgttgaaagctcacaagaaggccatc
cgcagagctactgtcaatactttcggctacatcgccaaggctattggtcctcacgatgtg
ctggccacgttgcttaacaatctgaaggtgcaggagcgtcaaaaccgtgtgtgcacaacg
gtagccatcgctattgtggccgagacgtgttcgccgttcaccgtgctccctgcgttgatg
aacgagtaccgtgttcctgaacttaacgttcagaacggtgtcctaaagtctctgtccttc
ctgtttgaatacatcggtgaaatgggcaaagattacatctatgccgtcacacctttgttg
gaggatgctctgatggacagggatcttgtacacagacagacagccagtgctgtggtgcag
catatgtctctgggagtgtatggctttggctgtgaagattctctcaatcatttgctcaac
tatgtttggccaaatgtctttgaaacgtcccctcatgttatccaagctgtcatgggggcc
cttgagggtctgcgggtggcaattggaccctgccgcatgctgcagtattgcttgcagggt
ttgttccatccagctcgcaaagtgcgtgatgtgtactggaagatttacaactccatctat
atcggctcccaggatgcactgatcgcacattatcctcttgtctacaatgatgagaagaac
tcatacgttcgctatgagctggagtactttctgtga

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