Carassius auratus (goldfish): 113109158
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Entry
113109158 CDS
T07313
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113109158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
caua03041
]
113109158
Spliceosome [BR:
caua03041
]
Complex A
U1 snRNP components
U1 related factors
113109158
Complex B
113109158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
PTPlike_phytase
WW_1
Motif
Other DBs
NCBI-GeneID:
113109158
NCBI-ProteinID:
XP_026128529
Ensembl:
ENSCARG00000004156
UniProt:
A0A6P6Q4M3
LinkDB
All DBs
Position
9:36290636..36310785
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AA seq
878 aa
AA seq
DB search
MSWTDANSGPSQAPPFAGVTLPPSGIPLPFMGPPGIPPHFPPMGMPPMGQRPPSMAPMPP
GILPPMIPPMGAPPMAQMPAMLPPMIPGMMMPPRLPAASIQPTGPPGVSPVESAAPAAPG
TASTTSTESDEQPKKKSVWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCLW
KEYKSDNGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTADVVAPGTIPALTSQSES
SVTVAAVAETEATMATVATEEQPSHVPAPVADVSSDVTVNSTEDTPSVETQPSNDVSKEE
RPELVKKVYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKLIINDPRYSALPKLSEKKQ
AFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFGDQDVWSCV
PERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLD
NPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQKFLD
ELHDHGQLHSMSAWMEMYPTVSADIRFNNMLGQPGSTPLDLFKFYVEDLKARYHDEKRII
KDILKDKGLLVEINTGFEEFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKEAAFKSMLKQATPPLEPEATWEGTRERFLKEPAFEDITLESERKRIFKDFMHV
LEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEEDEYQSKKKKRSASKSPSEHSSSG
ESERSYKKSKKHKKKGKKRRHKSGSPESEGEKERKGREKEKDKENDKSRGKTRGESKQKS
PKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgtcttggactgatgctaatagtggccccagtcaagcaccacctttcgctggtgtaacg
ttaccaccttcaggaatccccctgccctttatggggccaccaggaatcccgcctcacttc
cctccaatgggaatgccaccaatgggccagaggccgcccagcatggcccccatgcccccg
ggaatactgccccccatgatccccccgatgggagctccacccatggcacagatgccagcc
atgctaccaccaatgataccaggaatgatgatgcccccccgactgccagctgcatcaatc
cagcctacgggaccgcctggtgtgagtccagtggagtctgcagcaccggctgctcctgga
acagctagcaccacatcaactgaatctgatgaacagccaaaaaagaagtcagtatggact
gagcacaaatcactggatggaaaaacatattactacaacacagagaccaaacaatccacc
tgggagaaaccagatgaactcaaatcacctgcagagcaaatgttgtccaaatgtctgtgg
aaagagtataagtcggacaacggcaagccctactactacaactcccagaccaaagagtct
cgctggactaaacccaaggagctggaggacctggaggcgatgataaaggcagaagaaaac
gggacggctgatgttgtggctcctggcaccatccctgctctcacatctcagagcgagtcg
tctgttaccgtggcagcagttgctgagacggaggctaccatggcaacagtcgccacagag
gaacagccgtctcacgtgcctgctccggttgctgatgtcagcagtgatgtcacagttaac
tccactgaggacacgcccagcgtagagacacaacccagtaatgatgtttctaaggaggag
agacctgagctggtaaagaaagtttacaagtggaacacaaaagaggaggcaaagcaggca
tttaaagaactgctgaaggaaaagggcgtttcctccaatgcatcatgggagcaggcaatg
aagctgataattaacgaccctcgttacagtgctctgcccaagctgagtgaaaagaaacag
gcgttcaatgcttataaagtccagacagagaaagaggaaaaggaggaagccagaatcaaa
tacaaggagtctaaagagactttccagcgcttcctggagaaccacgagaagatgacctcc
accacacgatacaagaaagcggagcagatgtttggcgatcaggacgtgtggtcctgtgtc
cccgagagagaccggctggagatctacgaagatgtgctcttttatttagcaaagaaagag
aaggaacaagccaagcagctgaggaagaggaactgggaagctctgaagaacattttggac
aatatggccaatgtgacgtacagaacgacgtggtctgaggcccagcagtaccttctggat
aaccccacctttgctgaagacgaggagctgcagaacatggacaaggaagatgctctgatc
tgtttcgaggaacacatccgtgctcttgagaaagaggaggaggaagagaaacagaagact
ctgctgcgagagagacgcagacagcgcaagaaccgagagtctttccagaaattcctggat
gagcttcacgatcacgggcagctgcactccatgtctgcctggatggagatgtacccaacc
gtcagcgctgatatccgcttcaacaacatgctgggccagccaggctccacccctctggac
ttattcaagttttacgtcgaggatctgaaagctcgttatcatgatgagaagagaatcatt
aaagacatcctgaaggataagggcttgctggtggagatcaacacgggctttgaggagttt
ggctcagtgatcagctcagataaacgtgccaccacgctggatgcaggaaacatcaaactg
gccttcaatagtttgctggagaaagctgaagcacgcgagagggagagagagaaggaggag
gccaggaagatgaagaggaaggaggcggcgtttaagagcatgctgaaacaggccacgccc
cctctagagcccgaggccacatgggaggggacacgagagcgcttcctgaaagagcctgcg
tttgaggacatcacgctggagtccgagaggaagaggatattcaaagacttcatgcatgtg
ttagagcacgagtgtcaacatcatcattcaaagactaaaaaacactcgaagaaatccaag
aaacaccacagaaaacgttcccgatctcgatcaggctcagagtcagaggaggatgagtat
caatcgaagaagaagaaacgctctgcttccaaatctccatccgagcactcgtcctctggg
gaatctgagaggagttacaagaaatcgaagaaacacaagaagaagggaaagaaaagacga
cacaaatcgggctcccctgagtctgaaggagagaaagagcggaaaggaagagagaaagag
aaggataaagagaatgacaaatccagagggaagacacgtggagaatccaaacagaaatcg
cccaaaagaaagagtacaaaagaagagggtggatgggatacgtccgggagcgagctgagt
gaaggagagctggagaagaggaggcgcacgctcctggagcagctggacgcaccataa
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