KEGG   Carassius auratus (goldfish): 113109448
Entry
113109448         CDS       T07313                                 
Name
(RefSeq) roquin-2-like
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
caua  Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:caua00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:caua03000]
    113109448
   04121 Ubiquitin system [BR:caua04121]
    113109448
Transcription factors [BR:caua03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    113109448
Ubiquitin system [BR:caua04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    113109448
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-CCCH zf-RING_5 zf-RING_UBOX zf-CCCH_4 zf-RING_2 zf_CCCH_4 zf-CCCH_UNK Prok-RING_4
Other DBs
NCBI-GeneID: 113109448
NCBI-ProteinID: XP_026128800
Ensembl: ENSCARG00000020524
UniProt: A0A6P6Q9Q7
LinkDB
Position
10:6487759..6511383
AA seq 1030 aa
MPVQAAQWTEFLSCPICYNEFDACSHKPISLGCSHTVCKTCLHKLHRKACPFDQTAISTD
IDVLPVNCALLQLVGAPVPEREIVSVGSVEDTRHYEVCRICVEELALYLKPVSGGKGVVS
LSQSTLSRPMQRKLVTLVNCQLVEEEGRMRAVRACRSLGERTITELILQHQNSQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEVRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLMHKSHMQSIIDKLQSPESFAKSVQELTIILQRTGDPANLNSLRAPLERLAGI
DHNPDAAAPSWTELESVLLAVKVVVHGLVEFIQNFSKKSNESPQAQPNSKYKTSMCRDLR
QQGGCPRGASCTFAHTQEELEKYRMRNRKASGAVRPFPSVPVILPKTGTKGAVPGSEGKN
QGKDVPEDVSLTQLIPRGGDHQEDKTLPSSANGLPAAILEQNPISQSQSSVIASGGVQRM
TAVSSNTGLSSRELLLRCTTLRTRHHMTCHPTTNLPVISPHKSCNARFHRSSNVPESMLP
PSLGPLYPVPPADRLGPGPYGPPSTYASVSHAHSMYTPVYDSRRVWRPPLYPRDGGRSNS
LPPEVFHSTVYQPPLRERFNSLDSPYCSTVEQRAPMHRDAYNEELCRHKQEQWVHHHSNM
NRPSQSSPVFTVDVCPEHPEGVGGGRMTCKCHGGEESLAHYSPWSCSTISPFESEPHHLS
THSCSKQLDEESGGKQWLHMFEPYRRLKDEDPIIPFGEGPIISKWGAISRASRTGFHTTD
PVQATASQGCAGTTSINFRDYRCHIGHSDLRWGPRGSDSSSHSSFLESDQLGMSGLHVRH
DSLCRGSKQGTDLLGKDGTESDPDRDIELELSALHMEDTETQDCDSEDSMETQSRSKNSH
LSTVFSNPVASSHLENNLPDRMDTHLMKKIRKPLSPGDLSMGQMSMRTCLPRHGDPPRPS
PGPEMLLNGN
NT seq 3093 nt   +upstreamnt  +downstreamnt
atgccggtgcaggcagctcaatggactgagtttctatcctgccccatctgctacaatgag
tttgacgcctgcagccacaagcccatcagcctgggctgctcgcacaccgtctgcaagacc
tgcctgcacaaactgcaccgcaaggcctgtccttttgaccagacggccattagcactgac
attgatgtgctgcctgtcaactgtgccctcctgcagctggtgggggcgccggttccggag
agagagattgtgagtgtgggcagtgttgaagacacaagacattatgaagtgtgcaggatc
tgtgtggaggagctggcactgtatctcaaaccagtcagtggaggaaaaggtgtagtgagc
ctcagtcagagcacgctcagtagacccatgcagaggaagctggtgaccctggtgaactgc
cagctggtcgaggaggaggggcgtatgagggcggtccgggcgtgcagatctctgggtgag
cgcaccatcactgaactgatcctgcagcaccagaactcccagcagctctctgcaaaccta
tgggccgctgtgcgggcccgcggctgtcagtttctaggacctgccatgcaggaggacgct
ctgaagctggtgctgctggcgctggaggacggctcggctctctcgaggaaggttctggtg
ctgtttgtggtgcagaaactggaagtgcgcttccctcaggcgtctaagaccagcatcggt
catgtagttcagctgctgtaccgcgcctcctgctttaaggtgaccaaacgtgatgaagac
tcctccctcatgcagctcaaggaggagtttcgcacttacgaagccctgcgccgtgaacac
gacgctcagatcgttcacatcgcgatggaagcggggctgcgcatctcaccggagcagtgg
tcgtctctgctgtacggggatctcatgcacaaatctcacatgcagtcaatcatagacaag
cttcaatccccagaatcctttgcaaagagtgtgcaggagctcaccataatcctgcagaga
acaggagacccagccaacctcaacagcctcagagctcctctcgagcggctggccggcatc
gaccacaaccctgatgcggccgctccgtcctggacagagctggagagcgtgttattggct
gtgaaggttgttgtccacggtctggtggaattcatccaaaacttcagcaaaaagagcaat
gaaagccctcaggctcagcccaacagcaagtacaagacgagtatgtgcagggacttacgg
cagcagggcggctgtccgagaggggccagctgcacctttgcccacacgcaagaggagctg
gagaagtacagaatgaggaataggaaagccagtggggcggtgagacccttcccgtcagtt
ccagtgattctgcctaaaaccggcaccaaaggagcagtcccagggtcagaggggaagaac
caagggaaagacgtcccagaggacgtgtctctcactcagctcatccctagaggaggagac
caccaggaggacaaaacgctccccagtagtgcgaacggactgcctgctgccatcctagaa
caaaatcccatcagtcagagccagtcatctgtgatagcttcggggggtgtacagaggatg
actgcggtctcctcaaacacgggcctgtcctcacgagagctcctcctaagatgtactact
ctcaggaccagacaccatatgacctgtcaccctaccaccaacctgccagtgatttctcct
cacaagtcatgcaacgctcgtttccatcgttccagcaacgtccctgagtccatgttaccc
ccgtcattggggcctctgtaccctgttcctcctgcagacagattaggccccggcccgtac
ggcccaccctcgacctacgcctctgtgtcccatgcacacagcatgtacaccccggtctac
gacagccggcgcgtgtggaggccgccgctgtatcccagggatggtgggaggagtaactct
ctccctccagaggttttccattccaccgtctaccagccgcccctccgagagcgcttcaac
tcgctggacagcccctactgcagcaccgtggagcagagagcgccaatgcacagggatgcg
tacaacgaggaactctgtcgccacaaacaggaacagtgggtacatcaccacagcaacatg
aacaggccctcccaatcctcgccggtcttcactgtggatgtgtgtccagagcatcctgag
ggtgtaggtggtgggcgtatgacttgtaagtgtcatggtggagaagagagtctagcccac
tactcgccctggtcctgcagcaccatcagcccatttgagtcagagccccaccatttgtca
acccattcttgctccaaacagctagacgaggagagtggcggcaaacagtggctgcacatg
ttcgagccctacaggcgactgaaagacgaagatcccatcattccttttggagaggggccc
atcatctctaaatggggagccatctctcgggcgtcccgcactggttttcacaccactgac
ccggtccaagctactgcatcacaggggtgcgccggcaccacatcaatcaacttcagagac
tatcgctgtcatattggtcacagtgacctcagatggggcccacgtggatctgattcttct
agtcactccagctttctagaaagcgatcagctgggaatgtcagggctgcatgtaaggcac
gattccttatgcagggggtcaaagcagggcacagatttgctgggtaaggatgggacggag
agtgatcctgacagagacatcgagctggagctgtccgctctgcacatggaggacacagag
acacaggactgcgactctgaggactctatggaaacgcaaagccggtccaaaaacagccac
ctctctacagtcttcagtaatccagtggcaagttctcatttggaaaacaacctgcctgac
agaatggacacccaccttatgaagaagataagaaagcccctctcccctggagacctcagt
atgggacagatgtcaatgaggacatgcttgcccaggcatggagaccctccgcgacccagt
ccaggacctgagatgctgctaaacggtaactga

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