Carassius auratus (goldfish): 113109830
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Entry
113109830 CDS
T07313
Name
(RefSeq) LIM domain only protein 7-like isoform X1
KO
K06084
F-box protein 20
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
113109830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
caua04121
]
113109830
Ubiquitin system [BR:
caua04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
113109830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
PDZ_6
PDZ
PDZ_2
Motif
Other DBs
NCBI-GeneID:
113109830
NCBI-ProteinID:
XP_026129435
UniProt:
A0A6P6QBI3
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All DBs
Position
1:130001..161073
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AA seq
1178 aa
AA seq
DB search
MEWRQQSAVSCELAFQEAQRWIEEVTKKQFGSKSFRVALEDGVLLCDLINRLKPGIIRRV
NRLSTPIAGLDNVNVFLRACQKLGLNEAQLFHPGDLQDVSTRVTVRREETSRRLKNVLIT
IYWLGRKAQSDPFYTGPQLNLKAFEGLLGTALSKALEESVQSKSSVRDSGYAEGWFSDRE
DLFSLKQSGYRREDSVESLESVESRTLSLASDCTLTAGSEGWGSDAEAEHCFRMAEGSKS
DAPIRERVHVPSALRKIRQENRQGDRSHAGNLTRFPMRPSRYTGSKSMGDIPLEPIPQES
DHCSSFDPLGSHRVHQSSVGEVTLEPSAIQRVQQEQLQSIRDRIKESEAKWHEDLNRWKS
RRRSANFDLHRKREEREQTEPITDGGEASANRTAQLTGVPEESSSMPGPMSDAGSSVSST
GWSTSLASPLTNGTSFAPTKGTDAETTDSAGEFFTPPAAVVSTQSSRSSQATGDPELYEQ
QGPDFSHRVIPPESFCAGGARISATLPRGFRRSEGSSRLSTGVTPRPFGTKPSKVSSLPR
VYSMDDSHKGLICGNGDNSIIPSYLSGQGKVTASVDKGHCRSSTHPIHPKKEEEERRDRR
SSAPPINCFVTKVTVAASNVQTSPVVAEIRDIKVGQSEMRVCLNQKPNSGEDFGFKAHWD
STGACVKSVQAGSPAESCGLLMGDEIVALAGCRVAEMNYEQFKSSMDTAQQKGTLLMDIL
RHGQNGQPEHGVSISTTSPVETVVKAQVNGQPANGSQGVLSKTVNGRIQDNPDALRNKGG
SESAISDLQVPSISSTSSRWSWDHEEERRRQEKWQMEQERLLQEKYRRDQEKLEEEWRRA
QQEVYGEEHSATEEEICPDVLSNGNTTNIPPSSSNQFFATTSVASNQNAEKVEETQNRLT
AVHTAARQHSLKSEVECDSTTKSLCSEECYGFAKFTVSDRTKSKSTPALQSLHKQDAKGS
GKKKGQLSQTEKERLQILQEMRKKTPLLTDNSWIRQRNASLNKEPISVGTSVRRYESLDN
LQATNSWSRQSYTSGIANRPHSALGNTGLYRGGRSSLSPGSAIFSTGLKQSSNVPAPPIT
TTPEPSGPGSCPHSQQHGRRISLYLTFNPSVSAAGLNLGEGLSPELRSESDTDSSSITAA
TAESESVPPSPSDQNALQQIMEECTTEAASGITAINTT
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgtcagcagtctgcagtcagctgtgagctggcgttccaggaggcacagaga
tggattgaggaagtgacaaaaaagcaatttggaagtaaaagttttcgagtggctttagag
gacggggtccttctgtgcgacctgatcaacagattgaagccgggcatcatcagacgagtg
aacaggctctccactcccattgcaggcttggacaacgtgaatgtgtttctcagggcttgt
cagaaactagggcttaatgaggcacagctcttccatccgggagacctgcaagatgtgtcc
acacgtgtgactgtcagacgcgaagagacaagcaggagactgaaaaatgttttgataact
atatactggttgggcagaaaggcccagtctgatccgttttacactggaccacagctgaat
ctaaaagcctttgaaggtttgctgggcacagcattatctaaggctctggaggagtcagtg
cagtccaagtcgagtgtgagggacagtgggtacgcggagggctggttttctgaccgggag
gatctgttcagtctgaagcagtcgggctacaggagggaggactcagtcgagagcctggaa
tcagtggagtctcgcacactcagtctggcttcagactgcacacttacagccggcagtgaa
ggttggggtagtgacgcagaagcagaacattgcttcaggatggcagaaggcagtaaaagt
gatgcccccatcagagaaagagtgcatgtcccatctgccctgaggaagataaggcaggaa
aaccggcagggagacaggagtcatgcaggcaacctcactagatttcccatgagaccctct
cggtacacaggaagcaaatctatgggtgacatcccactggagcccattccacaggaatct
gaccactgctccagctttgacccgctggggtcacaccgtgttcaccagagctctgttgga
gaggtgacccttgaaccctcagccattcagagggttcagcaggaacagttacaaagcatc
cgggacagaataaaggaaagtgaagccaaatggcacgaagatctgaacaggtggaagagc
cggcgacgtagtgcgaactttgacctccacaggaagcgtgaggagagggagcagactgaa
cccattaccgatgggggagaggccagtgccaacaggactgcacagctcaccggggtgcca
gaggagagctccagcatgcctggacccatgagtgatgcgggctccagtgtcagcagtact
gggtggtccaccagcttggcttcacccctcacaaacgggacctcttttgctccgaccaaa
ggcacggatgctgagactactgactcggctggtgaattcttcacccctccagcagctgtt
gtctctacacagagttcacggagcagccaggctactggggatccagagctctatgagcag
cagggtccagacttcagccaccgcgtgattcccccggagagcttttgtgcagggggagcg
cgcatatctgccactctacccagaggtttcagaaggtccgaaggttcctcacgcctctcc
acaggtgtcacaccacgtccatttggaaccaaaccctccaaagtgtcctcactgcccaga
gtatattccatggatgactctcataaaggcctgatctgtggaaacggagataattcaatc
atcccctcgtacctcagcggtcaaggaaaggtcacagcctctgttgacaagggccactgt
cgttccagcactcatccaatccaccctaagaaggaagaagaagagagaagagatagaagg
tcatcagcacctccaattaactgttttgtcactaaagtgacagtggctgcctctaatgtg
caaacatctcccgttgtcgccgaaatcagggacattaaggtgggtcaaagtgaaatgcga
gtctgcttgaatcagaagcctaacagcggtgaagacttcggattcaaggctcactgggac
tcaactggtgcttgtgtgaaatctgttcaagcaggcagcccggcagagtcgtgtggtctg
ctgatgggtgatgagatcgtggccctggctggatgcagggtggctgagatgaattatgag
cagtttaagagcagtatggacaccgcacagcaaaagggcactttactgatggacatccta
agacacggccagaatggacagcccgagcacggtgtctcaatcagcacgacctctccggtg
gagaccgtggtgaaggcacaagtcaacggacagcctgccaatgggagtcagggagtgctg
tcaaaaacagtgaatggacgtattcaggataatccagatgctctaagaaacaaaggtggc
tcagagtctgccatctctgatctgcaggttccctccatcagtagcacctcatctcgctgg
tcatgggatcatgaagaggagaggaggcggcaagagaaatggcagatggaacaagagcgc
ctcctgcaggagaagtatcgacgtgatcaggagaagttagaggaggagtggaggagagct
cagcaggaggtctatggagaggagcacagtgctactgaggaggagatatgccctgatgtg
ctgtccaatggaaataccactaatattccaccttcctcctccaaccaattctttgctacc
acttcagtggcatccaatcagaatgcagagaaggtggaagaaacacagaacagactgacc
gctgtgcatacagcagcacgacagcattcactaaagtcagaagtggagtgtgattcaacc
acaaagagcctgtgctcagaggagtgctacgggtttgcaaagtttacagtttctgacagg
acaaagtcaaaatctactcctgcacttcagagccttcacaaacaagatgctaaaggaagc
ggtaaaaagaagggccagctgtcgcagacagaaaaggaacgtctgcagatcctgcaggag
atgaggaagaagactccgctcctcactgacaacagttggatccgtcagcgcaatgccagc
ctcaacaaagagcccatctctgtgggaacatctgtcaggagatatgaatctctggacaac
ctccaagcaaccaactcctggtccaggcagtcctacacttcaggtatcgcaaacaggccc
cattctgctttgggaaacactggcctttacagaggcggacgcagcagcctgagccctggt
tcagccatcttctctaccggtcttaagcaaagctccaacgttcccgctccacccatcaca
actacgcctgagccatcaggccctgggtcctgtccacactctcagcagcatggaagaagg
atttcactctacctgacctttaaccccagtgtgtcggctgcaggactgaacttgggagag
gggctgagtccggagctcaggtcagagtccgacacggacagctcttctataacagctgct
acagcagaatcagagtctgttcctccatctccaagtgaccagaatgcattgcaacagatc
atggaggagtgtaccacagaagcggcctcaggaatcacagctattaacacaacctaa
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