KEGG   Carassius auratus (goldfish): 113110698
Entry
113110698         CDS       T07313                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03018  RNA degradation
caua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113110698
  09123 Folding, sorting and degradation
   03018 RNA degradation
    113110698
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:caua03019]
    113110698
   03041 Spliceosome [BR:caua03041]
    113110698
Messenger RNA biogenesis [BR:caua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     113110698
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     113110698
Spliceosome [BR:caua03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    113110698
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 113110698
NCBI-ProteinID: XP_026130625
Ensembl: ENSCARG00000012551
UniProt: A0A6P6QES2
LinkDB
Position
11
AA seq 148 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
VRGSTIKYLRIPDEIIDMVKEDVMSKGRGRGGMQQNKPQGKGRGGGPGRGGGAGRGVFGG
RGRGMTGTGRGQQQDKKPGKPQGVKNQH
NT seq 447 nt   +upstreamnt  +downstreamnt
atgctcccattatctttactgaagacagcacagaaccacccgatgctggtggagttaaag
aatggtgaaacgtacaacggccatctggtcagctgtgacaactggatgaacatcaacttg
agagaagttatttgcacttcacgggatggagataaattttggaggatgccagaatgctat
gtcagaggaagcaccattaaatatttgcgaatccctgatgagatcatagatatggtgaaa
gaggatgtaatgtcgaagggacgtggtcgggggggcatgcagcagaacaagccacaggga
aagggcagaggaggcggacctggaagaggtggtggagccggcagaggtgtctttggtggc
cgtggcagaggcatgactggaactggccgtggacagcaacaagacaaaaagcctggaaag
ccacaaggtgtcaaaaaccaacactag

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