Carassius auratus (goldfish): 113111286
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Entry
113111286 CDS
T07313
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03013
Nucleocytoplasmic transport
caua03015
mRNA surveillance pathway
caua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113111286
09122 Translation
03013 Nucleocytoplasmic transport
113111286
03015 mRNA surveillance pathway
113111286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113111286
03041 Spliceosome [BR:
caua03041
]
113111286
03009 Ribosome biogenesis [BR:
caua03009
]
113111286
03012 Translation factors [BR:
caua03012
]
113111286
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113111286
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113111286
mRNA cycle factors
Stress granule specific factors
113111286
Spliceosome [BR:
caua03041
]
Complex C
Other components
EJC/TREX
113111286
Ribosome biogenesis [BR:
caua03009
]
Eukaryotic type
90S particles
Helicases
113111286
Translation factors [BR:
caua03012
]
Eukaryotic type
Initiation factors
eIF-4
113111286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
TniB
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
113111286
NCBI-ProteinID:
XP_026131693
Ensembl:
ENSCARG00000009233
UniProt:
A0A6P6QDR9
LinkDB
All DBs
Position
11:complement(18142142..18148499)
Genome browser
AA seq
406 aa
AA seq
DB search
MDTAAVPVRKRLLKEEDMTKIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCISVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHTCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgccgcagtccccgttaggaagagactcctgaaggaggaagacatgacgaaa
atcgagtttgagacgagcgaagaggtggatgtgacgccgacgttcgacacgatgggcctg
agggaagatctgctgcgcgggatctacgcgtacggttttgagaaaccgtcagccatccag
cagcgagccatcaaacagatcatcaaggggcgagacgtgatcgcccagtcacagtctgga
accggtaaaacagccacgttctgtatctcagtgctgcagtgtttggatattcaggttcga
gagactcaagcgctgatcctggctccgaccagagagttagccggacagatccagaaggtg
ctgctggcgctgggcgactacatgaacgttcagtgtcacacctgcatcggaggcacaaac
gtgggcgaggacatcaggaagctggactacggtcagcacgtggtggctgggacgcccggc
cgagtgttcgatatgatccgcaggaggagtttgaggactcgtgctattaagatgctggtg
ctggatgaagcagacgagatgctcaacaaaggttttaaggagcagatctatgatgtgtac
agatacctgcctcctgccactcaggtgtgtctcatcagcgccacgctgcctcacgagatc
ctggagatgaccaacaagttcatgaccgaccccatccgcatcctggtcaaacgtgatgaa
ttgactctggaggggattaagcagtttttcgtggctgtggagcgagaggagtggaagttc
gacacgctgtgtgacctttacgacacgctgaccatcacacaagccgtcatcttctgcaac
accaaacgcaaggtggactggctgacggagaagatgagggaggctaacttcaccgtgtcg
tcgatgcacggagacatgccacagaaagagcgagagtccatcatgaaggagttcagatct
ggagccagtcgagtgctgatctccacagacgtttgggccagaggtctggatgtgcctcag
gtgtctctcatcattaactacgacctgcccaacaacagagagctgtacatccacaggatt
ggtcgatcgggtcgttacggcaggaaaggtgtggccatcaactttgtgaagaacgatgac
atccgtatcctgcgagatattgagcagtactactccacacagatcgacgagatgcccatg
aacgtggctgacctgatctga
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