KEGG   Carassius auratus (goldfish): 113113368
Entry
113113368         CDS       T07313                                 
Name
(RefSeq) pre-mRNA-processing factor 19-like
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03040  Spliceosome
caua04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113113368
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    113113368
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:caua03041]
    113113368
   04121 Ubiquitin system [BR:caua04121]
    113113368
   03400 DNA repair and recombination proteins [BR:caua03400]
    113113368
Enzymes [BR:caua01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     113113368
Spliceosome [BR:caua03041]
 Complex B
  Other components
   Prp19 complex
    113113368
 Complex C
   Prp19-CDC5 complex
    113113368
Ubiquitin system [BR:caua04121]
 Ubiquitin ligases (E3)
  U-box type E3
   113113368
DNA repair and recombination proteins [BR:caua03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    113113368
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_EML_2 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Prp19 Beta-prop_WDR3_2nd WDR55 WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_Aladin Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_IFT122_1st WDR90_beta-prop_4th PEP5_VPS11_N Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_ACSF4 U-box WD40_RFWD3 Beta-prop_Nup120_160 Beta-prop_VPS8 Beta-prop_WDR35_TULP_N PROPPIN Ge1_WD40 Beta-prop_DCAF12 eIF2A Tricorn_2nd Cytochrom_D1 B-prop_COPA_B_2nd ATG16 Cep57_MT_bd zf-Nse
Other DBs
NCBI-GeneID: 113113368
NCBI-ProteinID: XP_026135293
Ensembl: ENSCARG00000054308
UniProt: A0A6P6QPF5
LinkDB
Position
14:complement(541236..548823)
AA seq 505 aa
MSLVCAISNEVPEHPCVSPVSSQVFERRLIEKYIAENGADPINGQPLSEEQLIDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIAAQATPASQPAAVGAGGEAMEVSEQVGMTSEIIQKLQDK
ATVLTTERKKRGKTVPEDLIRAEDLSKFRQVASHAGLHSASIPGIISLDLCPTDTNKVLT
GGADKNVVVFDRREEQIVATLKGHTKKVSSVIYHPAQSVVFSASPDSTIRVWSVSGGNCV
QVIRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDETAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSLKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFSDHSGLVT
GVAFGEHAQFLASTGMDRSLKFYSL
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgtctctggtttgtgctatttccaacgaggtgccggagcacccctgtgtctctcctgtc
tccagtcaagtatttgagaggcgtctgatcgagaagtacattgcagagaatggagcggac
cccatcaatggccagcctctgtccgaggagcagcttattgatatcaaggtgtctcacccc
attcgaccgaaggctccctctgccacaagtattcctgcgatcctcaaatctctgcaggat
gagtgggatgctgtgatgctgcacagtttcactctgaggcagcagctgcagaccactcga
caggagctgtctcacgctctctaccagcatgacgcggcctgcagagtcatagctcgactc
acgaaggaggtcactgccgccagagaggctctggctacactcaaacctcaagccggactg
atcgctgctcaagccactcctgcttctcagcctgcagctgtgggtgccggcggtgaggcc
atggaggtcagtgagcaggtcggaatgacttcagagatcatacagaagcttcaagacaag
gccaccgtcttaaccaccgagagaaagaagagaggaaagaccgtgccggaggacctgatc
agagcagaagatctcagcaagttccgccaagtggcttcccatgctggtcttcacagtgcc
agtatcccaggaatcatctctctggatctctgcccaacagacaccaacaaagtcctgacc
ggtggtgctgataagaacgtggtggtgttcgaccgtcgggaggagcagattgttgccacc
ctcaaagggcacaccaaaaaggtgtcgtctgtcatctaccaccctgctcagtcggtggtg
ttctcggcgtctccagacagcaccatccgtgtgtggtctgtgagcggaggcaactgtgtg
caggtgatcagggcccacgaggccagtgtgaccggcctgtctctgcacgctacaggagac
tacctgctgagctcttctgaggaccagtactgggctttctccgatatccagaccggacgt
gtcttgactaaagtgaccgatgagaccgctggatgtgctctgacctgtgctcagttccat
ccggacggtctgattttcggcaccggcacggcagattctcagattaagatctgggatctg
aaggaacggaccaatgtagccaacttccccggacattcaggtcctgtgacgtccatcgcc
ttctctgagaatggatactatctggccactggtgctcaggacagctcactcaagctgtgg
gatctgaggaagctgaagaacttcaagacaatcactttggacaacaattatgaggtgaag
tctttggtcttcgaccagagtgggacatatctggctgttggtggatcagacatcagagtt
tacatctgcaagcagtggtctgaggtcctcaacttctctgatcattctgggctggtgacc
ggcgttgctttcggggaacatgctcagttcctggcctccactggcatggacagaagtctc
aagttctacagcctttaa

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