Carassius auratus (goldfish): 113113840
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Entry
113113840 CDS
T07313
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03020
RNA polymerase
caua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113113840
09124 Replication and repair
03420 Nucleotide excision repair
113113840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caua03021
]
113113840
03400 DNA repair and recombination proteins [BR:
caua03400
]
113113840
Enzymes [BR:
caua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113113840
Transcription machinery [BR:
caua03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113113840
DNA repair and recombination proteins [BR:
caua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113113840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
113113840
NCBI-ProteinID:
XP_026136126
Ensembl:
ENSCARG00000049962
UniProt:
A0A6P6QSN7
LinkDB
All DBs
Position
14:17559446..17569602
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatcaagacgaagatatccagtatgatgaagatgatgatgaaatcacccctgat
ctgtggcaggaggcctgttggattgttattagttcatacttcgatgaaaaaggtttggtg
cgacagcagctggactcattcgatgagttcatccagatgtctgtgcagaggattgtggag
gatgctccacccattgacctgcaggctgaggcccagcacacatctggagaggtggaggaa
ccgcctcggtacctcctgaagtttgagcagatctatctgtccaaacccactcactgggaa
agagatggcgctccgtcacctatgatgccaaacgaagctagactccgaaatctaacctat
tctgcccctctgtatgtggacatcacaaagaccatcataaaagatggagaagagcaacag
cagacacagcatcagaaaaccttcatcggcaaaattcccatcatgctccgttccacgtac
tgcctcctcagcggcctaacagatcgtgatctttgtgagttgaatgagtgcccactggac
cctggaggctacttcatcatcaatggttcagagaaggtcctgattgctcaagaaaagatg
gccactaacacagtgtatgtgtttgccaagaaagactccaagtatgcttacacaggagag
tgcaggtcatgtctggagaactcctccagacccaccagcaccatctgggtcagcatgatg
gcccgtggaggacagggagtaaagaaaagtgccatcggccagaggattgtttccactttg
ccgtatatccggcaggaagtacccatcatcatagtattccgtgcattgggatttgtgtct
gacagagacatcctggaacacatcatctatgactttgatgatcctgagatgatggaaatg
gtgaagccatctttggatgaggcctttgtgattcaggaacagaatgtggctctgaacttc
attggttccagaggagccaagcctggtgtcaccaaagagagaagaatcaaatatgctaaa
gaggttttgcagaaggaagtgctgccacatgttggtgtatcagatttctgcgagaccaag
aaagcgtattttctaggttacatggttcacagactattgttggctgctctgggcagacga
gagctggatgacagagatcactatggcaacaagaggcttgatctcgcaggacccctgctt
gcattccttttcagaggaatgttcaagaatctgctaaaggagatcaggatctatgcacag
aagtttattgacagggggaaagacttcaatctcgagctggccattaagactcgcatcatt
tctgacggactcaagtattctctagccacggggaactggggcgatgtaaagaaagctcat
caggcaagagctggagtatcgcaggtgctaaacaggttgaccttcgcttctactctttcc
cacctgcgacgtgtaaactccccaataggacgagatggcaagctggccaaacctaggcag
cttcataacacactgtggggtatggtgtgccctgctgagaccccagagggccatgctgta
ggtttggtgaagaatttagcactcatggcctacatttctgtgggatctcagccgtccccc
atcttggagttcttggaagagtggagcatggagaacctggaggaaatctcaccggctgcc
atagcagatgcaactaagatttttgtgaatggttgctgggtgggtattcataaagatcca
gagcaactgatgaacaccctgcggaaactgaggagacagatggacatcattgtgtctgag
gtgtcaatgatcagagatattcgtgagagggagatcaggatctacacagatgctggcagg
atctgccgtccgctgcttattgtagaaaagcaaaaacttcttctgaagaggcgacatatt
gaccagctcaaagagagggagtacaacaactacagttggcaggacctagtagccagtggc
gtggttgaatatatcgacacactagaggaggagaccgtgatgttggccatgaccccagat
gaccttcaggagaagggagtggcttattgctccacctacacacattgtgagatccacccg
tccatgattttgggcgtctgtgcatccatcattcccttccctgatcacaaccagtctccc
agaaacacataccagtctgctatgggtaaacaagccatgggagtttacatcactaacttc
catgtgcgtatggataccctggcacatgtgctctactacccccagaaacccctagtcacg
actcgttccatggagtacctgcgctttagagagctgccagcaggtatcaattccattgtg
gctattgcatcatatactggttacaaccaggaagattctgtcatcatgaaccgttcggct
gtggatcgtggattcttcaggtctgtgttctaccgctcatacaaggaacaggaatctaag
aaaggctttgaccaggaagaaatctttgagaaacccaccagagagacctgtcaaggcatg
cgacatgccatctatgacaagttggatgacgatggtttgattgctcctggtgtacgtgtg
tctggcgaggacgttatcattggtaaaactgtaacgcttcccgagaatgacgatgaactg
gatagcaccaaccgtcgctacactaagagagactgcagcacattcctgcgcaccagtgag
accggaatcgttgaccaagtcatggtcacgctcaaccaagagggctacaagttttgcaaa
attagggtccgttcggttcgtataccacaaattggagacaagtttgccagtcggcacggt
cagaagggtacctgtggtatccagtacagacaagaggacatgccgttcacatgtgaagga
atcactccagatatcatcatcaaccctcacgccatcccctccagaatgacagtcggccat
ttgatcgagtgcctgcaggggaaggtgtccgctaacaaaggggagattggtgatgccacg
ccattcaatgatgctgtgaatgtacaaaaagtctccaacctgctgtcagaatatggttac
catctgagaggcaatgaggttctgtataatggcttcaccggccgtaagctcacctctcag
atcttcatcggacccacatactaccagcgtctgaagcacatggtggatgataagatccac
tccagagcccgtggccctgtccagatcctcaacagacagcccatggagggtagatcacgt
gatggtgggctgcgttttggagagatggaacgtgactgtcagatcgctcacggtgctgct
cagttccttaaagagaggctttttgaggcgtctgacccataccaggtccacgtctgcaat
ctatgtggcctcatggccatcgcaaacacccgcacacacacctatgagtgcaggggatgc
cgcaacaagacacagatctctttggtgaggatgccatatgcctgtaagctcttattccag
gagctgatgtctatgagcattgccccacggatgatgaccagctaa
DBGET
integrated database retrieval system
