KEGG T07313: 113113864

Carassius auratus (goldfish): 113113864

Entry

113113864         CDS       T07313

Name

(RefSeq) exosome complex component RRP40-like

K03681

exosome complex component RRP40

Organism

caua Carassius auratus (goldfish)

Pathway

caua03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:caua00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    113113864
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:caua03019]
    113113864
Messenger RNA biogenesis [BR:caua03019]
Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     113113864

SSDB

Motif

Pfam:

RRP40_S1 KH_6 Rrp40_N RRP40_N_mamm RRP4_S1 DUF7645

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

Ensembl:

UniProt:

LinkDB

Position

14:17519441..17521815

AA seq 245 aa
MDTIHACFKEKIGEVLLPGDVFSFRLPESGDGSIKSEKIICGPGLRRNGEEVRVCKSGIL
RHKQPNMYWIDSQQRRYVPAKGESVIGIVTTKSGDVFKVDVGGSEQASLSYLAFEGATKR
NRPNVQVGDLVYGQFTIANKDMEPELVCIDSCGRANGMGVFGADGLLFKVSLGLVRRLLA
PQSEIIKDLEKIFPFELVVGMNGRVWVKAKTVQQTLIVTNLLETSENMTSQQRQTLFKRV
AEGSL

NT seq 738 nt +upstreamnt +downstreamnt
atggacaccatacatgcttgtttcaaagagaaaatcggtgaagtgcttttaccaggagat
gtgttctctttcaggctgcctgaatctggagatggttctatcaaatccgaaaagataata
tgcggtccagggctccggagaaacggagaggaagttcgagtgtgtaaaagtggaattttg
cgccataaacagccaaatatgtactggatagactctcagcagagacggtatgtaccagcc
aaaggtgaaagtgtgatcggcattgtgacaacaaagtctggagatgtcttcaaagtggac
gtgggaggaagtgaacaggcatctctttcatacctagcatttgagggagcaaccaagagg
aacagacctaatgtgcaggttggagatctggtgtatggtcagttcacaattgcaaacaaa
gatatggagcccgagttggtttgtatagacagctgtggcagggccaacgggatgggggtg
tttggagctgatgggctgctctttaaagtatcactgggactcgtgcgcagacttctggct
cctcagagtgaaatcataaaggacctggagaagatcttcccctttgagctggttgttggg
atgaatggcagagtgtgggtgaaagcaaagaccgttcagcagacgctgatcgtgaccaat
ctcctggagacatctgagaacatgacctcccaacagagacagacactgtttaagagagtg
gcagaaggctccctctag

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