Carassius auratus (goldfish): 113114024
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Entry
113114024 CDS
T07313
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113114024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113114024
Enzymes [BR:
caua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113114024
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113114024
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113114024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
type_II_gspD_N0
Motif
Other DBs
NCBI-GeneID:
113114024
NCBI-ProteinID:
XP_026136492
Ensembl:
ENSCARG00000058997
UniProt:
A0A6P6QSU2
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All DBs
Position
14:22013998..22021330
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AA seq
558 aa
AA seq
DB search
MPKEKYDPPDSRRMYTIMSSEEANSGKKSFWDGLEITGNVRSLSSGLWSLTHLTALHLSE
NSLTSIPPEIAKLNNLVFLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLTQEVMSLYQEPDGTRRLLSYLLDNLNGAIKRIPTEPPPPRSWIVLQEP
ERTRPTALLTVMCYNVLCDKYATRQLYGYCPSWALNWSYRKKSIMQEILSGNADIISLQE
VETEQYYTYFLVELSKQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFSMVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELKKELMELSSGKSVHAMEKQLLLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKLSSVSGETNSIPLVLCADLNSLPDS
GVVEFLSKGGVDCTHKDFKELRYSDSLTNFNCNGKNGTSNGRITHGFKLKSAYENVLMPY
TNYTFDFRGVIDYIFYSRPQLNVLGVLGPLDTSWLFENNIIGCPHPHIPSDHLSLYAQLE
LVLPYPPLLNGVHLAGHR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagagaaatacgacccgcctgattccaggcggatgtacactatcatgtccagt
gaggaggcaaacagtgggaagaaatccttctgggatgggcttgaaataactggtaatgtc
cggagtctcagctcgggcctttggtcgctcacgcacctcactgctctgcacctcagtgaa
aactccctaacaagcatcccacctgaaattgccaagctgaacaaccttgtgttcttggat
ctgtcgtccaataagatcaggagcctgccagcagagcttggcaacatggtgtctctcagg
gaactgcttttaaataataaccagttgcgggttctgccattcgaattggggaaattgttt
cagttacaaacactggggttaaaaggcaatccactcactcaagaagttatgagcctctat
caggagccagatggtacccggcgactgctaagctatcttttggacaatcttaacggtgct
atcaagcgcatcccaacagagccacctccacccaggtcctggattgtgctgcaggagcct
gaaaggacaagacccacagccctgttaactgtaatgtgctataacgtgttgtgtgataag
tacgccacacgtcagctctatggctactgcccatcctgggcccttaactggagctacagg
aaaaagtccattatgcaggagatcctcagcggcaatgcagatattatcagcttacaggaa
gtggagacagagcagtattacacctacttccttgtggagctgagtaaacagggatacgat
ggatttttcagcccaaaatcccgggccagaaccatgtctgaatcagaccggaaacatgta
gatggatgtgcaatattctacaagactgaaaagttcagcatggtgcagaaacacacagta
gagtttaaccagctggctatggccaattcagagggctctgaggccatgttgaatcgggtc
atgaccaaggacaacattggggtggctgtgttgctggagctaaagaaggagttaatggag
ctgtcatcaggtaagtctgtccatgctatggagaagcagctcctactagtggctaatgct
cacatgcactgggacccagaatattctgacgtgaagctggtacagaccatgatgttcctg
tcagaggtgaagaatatcatagacaaagcttcccgcagtctaaagctctcctccgtgtca
ggagaaaccaacagcatccctttggtgctttgtgctgacctcaactcactccctgactcg
ggtgtagtggagttcctgagcaaaggtggggtggactgcactcacaaagacttcaaggag
ctgcgctacagtgacagtctgacaaacttcaactgcaacggcaaaaatggcacatctaac
gggaggatcacgcatggtttcaagctaaagagtgcctacgagaacgtgctcatgccttac
accaattacacttttgacttcagaggtgtcattgattacatcttctactccaggccacaa
ctgaacgtgctgggcgtcctcgggcctttggacacaagctggctctttgagaacaatatc
attggttgcccacaccctcacatcccctcagatcacttgtccttgtatgcacaactggag
ctggtcctgccttatcctccccttctcaatggagtccacttagctggacacaggtag
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