Carassius auratus (goldfish): 113114957
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Entry
113114957 CDS
T07313
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04382
Cornified envelope formation
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
caua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113114957
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113114957
09142 Cell motility
04820 Cytoskeleton in muscle cells
113114957
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113114957
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
caua04147
]
113114957
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113114957
Exosome [BR:
caua04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113114957
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113114957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113114957
NCBI-ProteinID:
XP_026137878
UniProt:
A0A6P6QX80
LinkDB
All DBs
Position
15:8685027..8743860
Genome browser
AA seq
1667 aa
AA seq
DB search
MTRPRRITSTSLLLLRRLLLALMTIHTALGGDKTERCDGRDCSVCQCFPPKGERGNPGVL
GPQGMQGLPGLPGPQGLNGEKGQRGLIGMPGLSGPKGDQGFQGDQGYAGLDGVPGHPGPG
GLPGLPGKDGCNGTRGQRGLNGETGQPGFPGPMGLPGLKGAKGDPFTRIQFLPGTPGADG
LRGIHGPEGLKGVTGPQGPPGRMGSDGYMGLQGIPGQRGLPGDPGRSLPGPKGVEGEQGE
QGEPGPFEYVEPNPEDYVKGEKGRKGQKGICGPPGPKGFEGFPAEKGEKGIIGLPGNRGP
PGYPGIIGFPGLKGALGENGLPGLYGNPGSQGYPGDPGPKGNPKTYYNNMIGLPGDRGIP
GLAGPPGNRGSMGIPGPPGDPGASIIGSVGESGLHGLNGFKGEKGDPGKLYGSYLNYGEP
GKPGPPGSKGQTGIPGNPVCGYYCLPGERGDPGQVGKRGPPGIKGVWGRKGPDGGCACDP
LGDLPGDPGPPGPQGITGDPGQKGFRGPPGDIGPIGEMGGRGATGPRGFTGVRGLKGEKG
EFRMISIKGDKGDTGSVGPFGKPGFNGRKGADGKMGAPGDPGSLGDSVIGPLGDRGCPGT
AGVKGHMGPTGPPGPNMMGSVGQRGEPGEAGPQGQMGPPGSKGVQGDTLPSAPAIPGPPG
SKGMPGCKGEIGKLGNPGCIGQIGPDGPKGEIGDPGNSGLAGLQGPVGLLGDPGETGPDG
ISSSGSPGTPGNRGPQGLKGSLGNSIIGAPGPKGPSGIQGYQGPKGVPGPPGPNGLQGAS
GVHGLPGRKGEKGKDGTPGAPGYPGVGPERCDKGQAGPPGKPGPPGFTGLRGCPGEKGPP
GVVGFQGIGVKGECGKPGIPGCQGRAGLQGPSGLKGDSGNPGGPGAKGLPGFPGQDGYPG
NKGKTGPLGAPGPKGFRGLNGYPGFPGFNGTKGQKGCSGPPGSLGEMISVPVKGKLGSPG
PNGESGVIGERGNKGEPGPPGQPGYPGRNGHSGYESGQRGPPGFPGLSGQPGVQGQRGPR
GIAGAPGYNGDPGDPGMTGLAGTPGFPGFDGPKGDKGESIFWQGPAGEIGPCGERGVSAP
PGEKGDWGDPGPPGPRGNCGPPGPPGNNGLAGRPGVVGPPGPCGRHGPEGPPGPPGKLGP
KGNPGSTGLGGPPGPPGLHGLDGLKGDKGEMGYRGEDLSGYRGNIGPSGDKGTPGDPGLQ
GPSQTGVRGPKGQCGSQGDPGQMGPVGFRGEECKIPKPGPSGERGYAGTDGPPGLKGETG
EAGSVFTVCGDFGEPGFPGSPGYKGEKGIHGPSGLPGSDGLEGPKGESGQSGLLGLPGPS
GPIGDCGPPGLWGAKGDKGVPGPKGEPGAVKLPSSRPPSPGPKGALGAPGPVGDVGDHGP
NGSGGLKGIKGQKGDIGFPGPTGTEGPVGELGSPGVSGDKGERGSRGSPGPDGDQGPPGT
SSAGFLLVKHSQSEEVPTCPEGLRALWNGYSLLYLEGQERAHTQDLGQAGSCLRMFSTMP
FSCCNMNKCDYASRNDKSYWLSTTASIPMNSILRGMEIKEHISRCVVCEASSPTITLHSQ
NETKPICPSDWSTLWSGYSFLMHTGSGDEGGGQSLSSTGSCLSNFRSQPFVECQGSYGTC
QYSPTFFSYWLTRENMHHKVPQGTVINGQNQRNSISSCSVCMKTTPL
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcccccgccggatcacttcaaccagcctccttctcctcaggaggcttttattg
gcacttatgacgatacacacagctttggggggagacaagacagaaaggtgtgatgggcga
gactgcagtgtctgccagtgtttcccccccaaaggagagagggggaatcctggtgtgtta
ggtccgcagggcatgcaggggcttccaggtttgcctggcccccaaggacttaatggcgaa
aagggtcaacgtggactcataggcatgcctggactctctggcccaaaaggagaccaaggc
tttcaaggagatcaaggctatgctggattagatggagtgcctggtcatccagggcctggt
ggtcttccagggcttccagggaaggatggctgtaatggaaccagggggcagcgtgggttg
aatggtgagacaggacagcctggcttcccgggaccaatgggactacctgggttaaaagga
gccaaaggagacccgtttacaaggatacagttccttcctgggacacctggtgccgatgga
ctacgtggaatacatggaccagaagggctaaaaggggtcactggcccacaaggtccacca
ggacgaatggggtctgatgggtatatgggcttacaaggaataccaggtcaaagaggccta
ccaggagacccaggaagatcactgcctggaccaaaaggagttgagggggaacagggggaa
cagggtgaaccaggtccttttgaatatgtggagcccaacccagaagactatgtaaaaggc
gaaaaggggaggaaaggtcagaaaggaatttgtggaccacctggcccaaagggttttgaa
gggtttccagctgaaaaaggagagaaaggcataattggtttacctggtaacagaggccca
cctggatatccaggaataattggctttccaggacttaagggggcactaggggaaaatggt
ctccctggtctatatggcaacccagggtcacagggctacccaggagaccccggacctaaa
ggaaacccaaaaacctattacaacaatatgattggactacctggagatcgtggaattcct
ggtttagctggacctcctgggaatagagggtcaatgggtatacctggaccccctggtgat
cctggagcatctataataggttcagtgggggaatctggtttgcatggtcttaatggtttc
aaaggagaaaaaggtgacccaggaaaattatatgggtcatacttaaactatggggaacct
ggaaaacctggccctcctggatccaaaggacagacaggaattcctggtaatcctgtttgt
ggttactattgcctgcctggagagcgtggagatcccgggcaggttgggaaaagagggcct
cctggaataaaaggtgtttgggggagaaaaggtcctgatgggggatgtgcatgtgacccc
cttggtgatctacctggcgatcctggccccccaggtcctcagggtatcactggtgatcca
gggcaaaaagggttccggggtcctcctggtgatatcggacccatcggagagatgggtggg
agaggtgcaactggtcccagaggcttcacaggtgtcagagggcttaaaggagagaaagga
gaatttaggatgatcagcataaagggggacaaaggtgacacgggatctgttggaccattt
ggaaaaccagggtttaatgggaggaaaggtgctgatgggaagatgggtgcccctggagat
cctggatctctgggagatagtgttattggtccgctgggtgaccgagggtgtccaggaact
gctggtgtaaaaggccacatgggtccaactggtcctcctggcccgaatatgatggggtca
gttgggcaacggggggaaccaggggaagcaggacctcaaggccagatgggaccccctggt
tctaaaggtgttcaaggtgataccctgccctctgcacctgccatacctggacccccaggt
tctaaaggaatgccaggttgtaaaggtgagataggtaagcttggaaatccaggatgcata
ggacaaattggaccagatggtcccaagggagagattggagaccctggcaatagtgggttg
gcaggacttcaaggtccggttggattattaggagatccaggtgagactggcccagatgga
atcagttctagtggctcacctggcacacctggtaatcgtggaccccaaggtctgaaaggg
tctttaggaaactctattataggggccccaggaccgaaggggccaagtgggattcaggga
tatcagggtcctaaaggtgtccctggacctcctggaccaaatggattgcaaggtgcatct
ggagttcatggacttcctggtagaaaaggggaaaaaggaaaggatggtacaccaggagca
cctggttacccaggtgtgggaccagagcggtgtgacaaaggacaagctggtccacctggc
aaaccaggaccaccaggcttcactggactgagaggctgccctggtgagaaaggaccccct
ggggtggtgggatttcaaggcattggagtcaaaggagaatgtggcaagcctggtatccca
ggctgtcagggacgcgcaggccttcagggaccttcaggactcaaaggggacagtggaaac
cctggaggccctggagcaaagggtttgcctggatttcctggccaagatggctatcctggc
aacaaagggaagaccggccctttgggggctcctggaccgaaaggctttaggggtctcaat
ggatatccaggtttcccagggttcaacggaaccaagggccagaaaggatgcagtgggcct
ccaggatctctgggagagatgatttcagtgccagtgaagggcaaactagggtcacctgga
cctaatggggagagtggggtcattggagaaaggggtaataagggtgagccagggccgcct
ggacaaccagggtatcccggacgtaatggacattcagggtatgagagtggccagcgtgga
ccaccaggctttccggggttgtctggccagcctggtgtccaagggcaacgtgggccaagg
ggaattgcaggagctcctgggtataatggtgatccgggtgatcctggaatgactggtctg
gcaggaacccctggtttccctgggtttgatggtcctaaaggtgacaaaggtgaatctatt
ttttggcaaggaccagcaggtgagatagggccatgtggagaaagaggagtgtcagctccc
cctggtgaaaagggagactggggtgaccctggcccacccgggcctaggggaaactgtggt
ccacctggaccacctgggaacaatggcctggctggacgtccaggagtggttgggccccca
ggtccatgtggaagacatggtccagaaggtcctccggggcctccaggtaaactgggccct
aaaggaaacccaggatccactggccttggaggacctccggggcccccagggctccatgga
cttgacggcctgaagggggacaagggtgaaatgggatatcgaggagaggatttaagtggg
tataggggcaatataggaccatctggagacaagggcactccaggagacccaggtttacaa
ggtccatcacaaacaggtgtccgaggtccaaaaggacagtgtggaagccaaggagaccct
ggtcaaatgggtcctgtaggctttcgtggtgaagaatgtaagattcctaaacctggaccc
agtggagaacggggatacgctgggacagatggacctccagggctcaagggagagacagga
gaggcaggcagtgtgttcacagtgtgtggtgattttggtgaaccaggttttcctggttcg
ccagggtataaaggagaaaaaggaatccatgggcccagtggcctcccagggtctgacggc
ctagaaggtccaaaaggtgaaagtggacaaagtggacttttgggccttccgggaccctct
ggccccataggagattgtggaccccctggtctttggggcgcaaaaggagacaaaggggtc
ccagggccaaaaggagagcctggggctgtcaaacttccttcttctcgtcccccttctcct
ggacctaagggtgctcttggtgcacctggcccggttggggatgttggtgatcatggacct
aatggctctgggggtctgaaaggtataaagggacaaaaaggagatattggattccctgga
cctactgggacagaaggaccagttggagaacttggaagccctggagtgtctggcgacaaa
ggagaaaggggcagtcggggatccccagggccagatggtgatcagggtccccctggcaca
tcatctgccggctttcttttggtgaagcacagccagtctgaggaagtgcccacttgtcct
gagggcttaagagcgttatggaatggctacagcctgctatatctggagggtcaagagaga
gcacacacacaagacctgggccaggcaggttcatgtctgcgtatgttcagcaccatgcca
ttctcctgctgtaatatgaacaagtgtgattatgccagtcgcaatgacaaatcctattgg
ctctctacaactgcctcaattccaatgaattccattctgaggggaatggaaattaaagaa
cacatcagcagatgtgtggtgtgtgaggcgtcatcgccaaccattacattacacagtcaa
aacgaaactaaaccaatctgtccttctgattggagcacactatggtctggatattcattc
ctcatgcatacaggatcaggggacgagggaggtggacagtctctgtcatcaacaggaagc
tgtttgtcgaacttccgcagccagccgttcgtggagtgccaaggttcgtatggcacatgc
cagtattcccccaccttcttcagttactggctgactagagagaacatgcaccacaaggtt
ccccaaggtactgtgatcaacggacagaaccagcgcaacagcatcagctcatgcagcgtc
tgcatgaagacgacgccgttataa
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