Carassius auratus (goldfish): 113114958
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Entry
113114958 CDS
T07313
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04382
Cornified envelope formation
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
caua04518
Integrin signaling
caua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113114958
04518 Integrin signaling
113114958
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113114958
09142 Cell motility
04820 Cytoskeleton in muscle cells
113114958
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113114958
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
caua04147
]
113114958
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113114958
Exosome [BR:
caua04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113114958
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113114958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113114958
NCBI-ProteinID:
XP_026137881
Ensembl:
ENSCARG00000005414
UniProt:
A0A6P6QXF9
LinkDB
All DBs
Position
15:complement(8648963..8684981)
Genome browser
AA seq
1652 aa
AA seq
DB search
MDSCLILRATLFGIMLLGLVTPAQTKSGCVCSGKSGCSCEGIKGQKGEMGMPGLPGAKGF
QGHRGKEGHPGPPGENGNIGFPGRPGPKGSRGVFGTPGFSGPPGLPGFPGKEGPRGPHGL
PGCNGTKGEPGPPGLTGPMGAPGCPGTPGIQGPKGDSFYQPPSPQVKGHCGLPGRDGDKG
YPGLPGMPGPPGPEGPRGFPGIDGFPGPQGEKGLEGRSMVIPGPQGQKGERGPPGVPGQK
GVKLFASGPKEPKGDTGDPGDIGCPGPAGPCGRSGPKGKKGEIGQPGGPGKPGKDGLTGE
TGPKGIPGDRGYPGVTGIAGGKGLKGDPGAPGAPGEFIVIDNAIKGQKGFPGPPGLPGLP
GSEGFIGIPGYTGPPGQGIPGPKGKPGPPGFRGVKGERGDPAPNSIGPKGQDGIPGKQGP
PGDPGPPGIPKVNTLLGEKGFKGHGGITGPPGLRGVAGTPGDQGEVCSLCAASIADPGPP
GQHGDSGDPGKQGVGGNPGNKGFQGFKGPDGPPGPPGYLGPPGPPGAPGPKGDLDIRNVL
GDKGQKGNCGAEGQLGINGQDGRPGTPGFKGPPGAKGYPSPAGPKGNQGDPGICGEPGCP
GPMGSQGLMGIGRPGAPGQKGCMGPVGLQGNPGEPGEKGSPGPVHMTPGNRGEPGLPGPP
GQQGLPGNDGCPGTQGLPGLSGLKGEKGPSMPGAPGFTGPKGDKGVKGKQGPSCIGSVGR
PGPPGPPGNPGPKGEISFGSPGPKGRRGFPGDEGCLGQPGISGPPGLPGCSGQRGRDGPP
GENGVRGPDGLPGVSGISGCCTPGAKGDEGPLGIKGLDGPSGLPGPKGPQGEPGPPGQGV
PGIRGETGIPGLIGDAGLVGIRGSKGFQGRDGSPGFPGMRGDEGIPGLTGLPGEDGNPGP
RGFQGPKGLMGRNGVEGNVGTPGNPGDRGDCGPKGLESRVMCPGDPGDCGLPGLLGLTGA
KGELGLPGNYGQCGKNGVPGRPGPPGPPGEAGQNGLPGNRGQDGCFGDPGVMGFPGVKGL
KGLPGVRGETGTPGVQGPIGPKGIKGEPSPPVIGPPGQPGQKGEPGCPGHRGERGERGIC
GTSGPPGLSGASGERGEPGVPGVPGLPGAPGDEGLNGLSGPPGCEGPCGPPGVPGSAGDP
GPPGLRGDQGKDGFPGPAGDKGDRGCPAVGAPGPPGLKGSKGSKGCSGPPGPCGPPGPCG
PAGDIGLPGQLGKMGPPGFPGPPGACISGPKGEQGPNGLPGLQGLRGPRGPAGDPGPGVK
GDKGNIGPQGLVGSPGCVGDRGVPGLRGKNGDPGFKGPKGDMGPLGNAGPVGQKGKCGPI
GPPGLKGCKGMYGTKGPKGCDVVAQVMTLQGDPGFPGQVGGKGEPGERGPKGLQGPKGKK
GQIGSRGADGVVGQNGTRGPKGDTGPKGIKGFPGLSGEVGPKGSQGPPGMKDGFHFTKHS
QKTSMPDCPPGLTLLYSGYSLLFINGNKRAHGQDLGTMGSCLQVFSTMPFLVCNPNNTCQ
YAFRNDYSYWLSTDTPKSPDMDLISGGLLADYISRCSVCEAPTNVIAVHSQTTEIPECPR
GWLSLWKGYSFVMQTGAGAEGSGQPLISPGSCLEEFREIPFIECHGRGTCNFYPDSFSFW
LAALDGSRMFSTPTPQPVKQEDISRCRVCMKQ
NT seq
4959 nt
NT seq
+upstream
nt +downstream
nt
atggattcttgcctaatattgcgagcgacacttttcggaataatgttgctgggacttgtt
actccggctcaaactaaatcggggtgtgtctgcagtgggaaatcaggatgcagctgtgaa
ggaatcaaaggacaaaagggtgagatggggatgcctggtttgcctggtgcaaaaggcttt
caggggcatcgagggaaagaaggtcatcctggaccgcccggtgaaaatggaaatattgga
tttccaggcaggcctggacctaaaggttctaggggagtttttgggacaccaggattctct
ggcccaccaggactaccggggttccctggaaaagaggggccgagggggcctcatggtctc
ccaggatgcaatggaactaagggtgagcctggtcccccaggcttaacaggaccgatggga
gctcctgggtgtccggggacgccaggaatccaaggacctaagggagatagcttttaccag
ccaccctctccacaagtgaaaggacattgtggtttaccaggcagagatggagataaaggg
tacccgggattgccagggatgccaggaccacctggaccagaggggcctagaggttttcca
ggaatagacggatttcctggaccacaaggagagaagggtctagagggtcgaagcatggta
atacctggaccccaaggtcaaaagggggagaggggaccacctggtgtaccaggacaaaaa
ggcgtaaaattatttgcatcaggaccaaaagagcctaagggtgacactggggatcctgga
gacattggatgtcctggcccagctggtccttgtggtcgttctggtcctaaggggaagaaa
ggggaaattgggcaaccagggggtccggggaaacccggaaaggatgggctgacaggagag
acaggccctaagggaatccctggagacagaggatatccaggagttacaggaatagcaggg
ggaaagggtctaaagggtgaccccggtgcccctggtgcccccggagagttcattgtaata
gataatgcgatcaaaggtcagaaagggtttcctggacctccaggacttcctggtctacca
ggcagtgaaggtttcattggaattcctggatatacaggtcctccaggacaaggcatacca
ggacctaaaggaaaaccaggtcccccaggattcagaggtgtgaaaggggaaagaggagat
cctgctcctaacagcataggacccaaaggacaagatggcataccagggaaacaaggaccc
cctggtgacccaggacctccaggaattccaaaagttaacaccctcctgggagaaaaaggg
ttcaagggtcacggaggcataacaggccctccgggtctgcgtggagttgctgggacccca
ggtgaccaaggagaggtttgcagtctttgtgctgcttctattgctgatcctggacctcca
ggacaacatggagattcaggcgaccccggaaagcaaggagttggaggaaatccaggcaat
aaaggattccaaggattcaaaggtccagatggtccacctggtcctccgggttacttaggt
cctccagggcctccaggggctccagggcccaaaggagacctagatataagaaatgtgctt
ggggataaaggccagaaaggaaactgtggtgcagaaggacaactggggataaatgggcaa
gatggcaggccgggcacccctggcttcaaaggaccaccaggagcaaaaggatatccaagt
cctgcaggccctaagggcaaccaaggagatccagggatttgtggggaacctggatgccca
ggtccaatgggcagccaagggttaatgggtattgggcgaccaggggcacctggacagaaa
ggatgtatgggaccagttggcctgcaaggaaatcctggagaaccaggtgagaaaggttct
ccaggtcctgtacacatgacaccaggaaaccggggtgagcctggactgcctggtccacct
ggtcaacaaggacttccaggaaatgatggttgtccaggaactcaaggattaccaggatta
agtgggttaaaaggagagaaaggaccatcaatgccaggagctcctggatttactggtccc
aaaggtgataagggtgtgaaagggaaacaaggtccatcttgtattggaagtgtaggccgt
cctggacccccaggaccaccaggaaatccaggtccaaagggtgaaatatcatttggctcc
ccagggcccaagggtcgacggggctttccaggagatgaagggtgccttgggcaaccagga
atttctggtccccctggattaccaggatgttcgggtcaaagaggaagggatggaccacca
ggagaaaatggtgtgcggggtcctgatggtttgcctggagtgtctggcatttctggatgc
tgtacgccaggagccaaaggcgatgaagggcccttaggcattaaagggctagatggaccc
agtgggctgccagggccgaagggtccacaaggtgaacctggaccacctggacagggtgta
cctggtataagaggtgagactggaatacctggactaatcggagatgctggtttggttggt
atccggggatcaaaaggtttccaaggtcgggatggctcaccaggctttccaggtatgcgg
ggagatgagggaattcctggattgactggtctacctggagaagatggaaatcctggacca
cggggattccagggacccaaaggtttaatgggtaggaatggagtggaaggtaacgtagga
acacccgggaatccaggagaccgtggagattgtggtcccaagggacttgaatcaagagtt
atgtgtccaggggatcctggtgactgtggcctaccaggtcttcttggtctaactggcgct
aaaggggaattaggactcccaggcaattatggacaatgtgggaagaatggagttccaggc
agacctggtccaccaggccctcctggtgaagctggccagaatggacttcctggaaatcga
ggtcaagatggatgctttggggatccaggagttatggggtttccaggagtgaaaggcctc
aaaggtttacctggtgttcgtggggagactgggactcctggtgtccaaggaccaattgga
ccaaaggggatcaaaggtgaacccagcccacctgtgatagggcctccaggacaacctggt
caaaagggtgagccaggctgtccagggcatagaggggaaaggggggaaaggggtatatgt
gggacgagtgggcccccaggtttatcaggggcttctggtgaaagaggtgaacccggagta
ccaggagttccaggactccctggagctccaggtgatgaaggtttaaatgggctttcgggt
ccacctggatgtgaagggccctgtggtcctccaggtgttcctggttcagctggagatcct
gggccaccaggacttcgtggagaccaaggcaaggatggctttccaggaccagcgggggat
aaaggagacagagggtgcccagcagttggagctcctggccctcctggcctcaagggttcg
aaaggttctaaaggctgttctgggcccccagggccatgtggaccgccaggaccctgtggt
ccagccggagatattggtcttccaggccaacttgggaaaatggggccaccagggtttcca
ggtcccccaggtgcctgtatcagtggcccaaaaggggagcaaggacctaatggattacct
ggcctacaaggactcagaggaccacgtgggcctgctggcgacccaggtccaggcgtaaag
ggagataaaggcaacatcgggccccaggggcttgtgggatcacctggttgtgttggtgac
cggggagttccagggttgcgtggtaagaatggagatcctggtttcaagggtccaaaagga
gacatggggccattgggtaatgctgggccagttggccaaaaaggaaaatgtggtccaatt
ggtcctcctggactaaaaggttgtaaaggaatgtacggaactaaagggcctaaagggtgt
gatgttgtggctcaggtcatgactctccaaggagaccctggcttccctggacaagtcggg
ggaaaaggagaaccaggagaacgaggacctaaagggctacaaggtccaaaaggaaaaaaa
ggtcaaatcggaagcagaggtgcagatggagttgttggacaaaatgggacacgtggacca
aaaggagacactggcccaaaaggaataaaaggttttcctggtttgtcaggcgaagtgggt
cccaagggttcacaaggtccacctgggatgaaagacggtttccattttaccaagcatagt
cagaaaacatctatgccagactgtcctcctgggttaacgcttttgtactctggatattcg
cttctcttcatcaatggaaataaacgcgcacatggacaagacctaggaaccatgggaagc
tgtttgcaagtattctccaccatgcctttccttgtgtgcaatcccaacaacacatgtcaa
tatgcctttcgaaatgattactcctattggctgtctacagacacaccgaagtctcccgac
atggatttgatatctggtggtttgttggctgattatatcagcaggtgttcagtgtgtgag
gcaccaactaatgtaatagcagttcacagccagaccacagagatcccagagtgccctaga
ggatggctttccctatggaaaggttattcctttgtaatgcaaacaggtgctggtgcagag
ggttccggacagccgctgatttctcctggatcctgtctggaagaattccgggagattcca
ttcatagagtgtcatggccgtggcacatgtaacttctatcctgattccttcagcttctgg
cttgcagcacttgatggtagcagaatgttcagtactccaaccccccagccagtaaaacag
gaagacatcagccgctgccgggtctgtatgaagcagtag
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integrated database retrieval system
