Carassius auratus (goldfish): 113115002
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Entry
113115002 CDS
T07313
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113115002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113115002
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113115002
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_Gbeta
WDR55
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
Beta-prop_TEP1_2nd
ASA1
ANAPC4_WD40
DSE1_N
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
CFAP251_N
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
eIF2A
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_NOL10_N
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_WDR11_2nd
Beta-prop_WDR41
Ge1_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
113115002
NCBI-ProteinID:
XP_026137972
Ensembl:
ENSCARG00000013139
UniProt:
A0A6P6QX35
LinkDB
All DBs
Position
2:9388938..9413537
Genome browser
AA seq
1095 aa
AA seq
DB search
MATDIGSPPRFFHMPRFQHQAPRQVFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRYLENRLWQRDHRDFRAIQPDAGCYNDLVPPVGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNG
NWLLTASSDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
AGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDIETSSVAAIPGMGIPEQLKAAMEQEQTGKEMAAEPEMSIPGLDWGMEE
VMLKDQKKPPTKKVPYAKPIPAQFQQAWAENKVPAMPPGEVLKERKDEKTVDGKKKTQAE
IEQEMAALQYTNPVLLEQLKIERMAQLQEQGMPPPAGQSGPMPPFPGQGGPIPPPTQGFP
QSMPPQQMHHNVPPMGPGGIPGPFMPPGQMGPPGPPMHQGPPPQGMMGPDMHRPPRHSGA
HRNMGPQGPHGMQPGPRGMQGPPLTGMPPGSGGPPVGMMGPPPRGQGPPQGGMMHQDMRG
PVPHGNMMGPKGPMQGSMMGPPPRTHGTMQGNMHGMGPPPGGMHGPPNNMQGPPGNMQGP
PPYMQGKPPHMGDGNRGQFNQGHNPGPQSMMHGIGQQGPNGKGDGPRGPPNHHMGPPTER
QDPGQGSDGGQYWGDDGGYQEGWRRGPGQEYSVGHRGISGGPWEAQERFSSNDGEYMGHN
RYDGYEDSDEEFNQRQRRPPHGDDSYRRGGPSGRGEMGGYQDEYGGDESFDSQEDMGQGW
GGRGRPRGGPPRGGHESYQDGQRPDHNIHDSPSPASRERSSSLQGMDMASLPPRKRPWHD
GPGTGDMDSSGAGPDDRGAGRPSPRDEGGFGPPSRGGRGSWGRGGLPNPGGPGPNLGPNI
RRGAPRGVMRGGRGR
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagatattggctcacctccccggttcttccatatgcctcggttccaacaccag
gcacctcgtcaggtgttctacaagaggccggactttgcccagcagcaggctatgcagcag
ctcactttcgatggcaaacgcatgaggaaagctgtgaaccgcaagaccattgattataat
ccatctgtcatcagatatcttgagaatcgattgtggcaacgagatcatcgtgatttccgt
gctattcaacctgatgcaggatgctacaatgatcttgttcctccagttggtatgcttaat
aaccctatgaatgctgttacaacaaagtttgtcagaacctccaccaacaaagtcaaatgc
cctgtgtttgttgtgcggtggactcctgaaggcagacgacttgtaacaggtgcctccagt
ggggagtttactttatggaatgggctcacatttaacttcgaaacaattctgcaggcgcat
gatagccctgtcagggcaatgacttggtctcacaatgacatgtggatgttgactgctgac
catggaggttacgtgaagtactggcagtccaacatgaataatgtcaagatgttccaggct
cacaaggaggcgattagagaggccagtttctctcctacggataataaatttgccacttgc
tctgatgatggaactgtacgcatctgggactttctgcgctgtcatgaggaaagaattctt
agaggtcatggagcagatgtgaagtgtgtcgattggcatcccacaaagggcttggtggtg
tctggcagcaaagacagccagcaacctatcaaattttgggacccaaagactggacaaagt
ctggcaacactacatgcacataaaaatacagtcatggaggtgaagtggaacctcaatgga
aactggctattgacggcgtcaagtgaccatttatgcaaactgtttgacattcgcaacctc
aaagaggagctgcaggtttttagaggacataagaaagaagccacagctgtagcttggcac
ccagttcatgagggcttgtttgccagtggaggctctgatggatcattgctattttggcat
gcaggtgtggaaaaagaggtgggaggaatggagatggctcatgaaggaatgatctggagt
ttagcctggcatccactgggccacatcttgtgttctgggtctaatgatcataccagcaaa
ttttggacaagaaatcggccaggggacaagatgcgggacagatacaatctgaacttgttg
cctggaatgtcagaggatggagtggagtatgatgacatagagaccagtagtgttgcagcc
attcctggcatggggatcccagaacagctgaaggctgccatggaacaagaacaaacaggc
aaagagatggcggcagaaccagagatgagcattccagggctagactggggaatggaagag
gtcatgctgaaggaccaaaaaaagcccccgactaaaaaggttccttatgcaaagccaatt
ccagctcagtttcagcaggcctgggcagagaataaggttccagcgatgcctcccggagag
gttctaaaagaaaggaaggatgagaagacagtagatggcaaaaagaagacgcaagcagag
attgagcaggaaatggctgccctgcagtatacaaacccagtgttgcttgagcaactgaag
attgagcgaatggcacagttgcaagagcagggaatgcctccccctgctggacagtcaggg
ccaatgccaccctttccggggcagggtggtccgatacccccaccgacacaaggctttcct
cagtccatgcctccacaacagatgcaccacaacgtgcctccaatgggaccaggtggaata
cctggtcctttcatgccaccaggccagatgggtccaccaggacctcccatgcatcagggt
ccccctcctcagggcatgatgggtccagacatgcacagacctccacgtcactcaggcgct
cacaggaatatgggaccccagggtcctcatggtatgcaacctggccccagaggcatgcaa
ggacctcccctaacaggaatgcccccaggttctggtggacctccagttggtatgatggga
ccaccaccacgaggacaggggccaccacagggaggtatgatgcatcaagacatgagggga
cctgtgcctcatggaaacatgatgggccctaagggacccatgcaaggaagtatgatgggg
cctccacccaggactcatggtaccatgcagggaaatatgcatggaatggggcctcctcca
gggggtatgcatggaccaccaaacaacatgcaagggccaccaggaaacatgcagggccct
ccaccatatatgcaaggcaaaccaccacacatgggtgatggaaaccgtggacagttcaac
cagggacataatcctgggcctcaatcaatgatgcatggaataggacagcagggtcctaac
gggaaaggagatggtcctcgaggaccacctaaccaccacatgggacccccaacagagcga
caagatcctggtcagggctcagatgggggccagtactggggtgatgatgggggttatcaa
gaaggctggagaagaggtcctgggcaggaatactctgtaggccacagaggaatctctggt
ggaccatgggaggcccaagaaaggttttcctcgaatgatggagagtacatgggacacaac
agatatgatggctatgaggactctgatgaggagtttaaccagaggcaaagacggccaccg
catggagatgactcataccggaggggtggcccgagtggccgtggtgaaatgggcggctac
caagatgagtatggtggagatgagagctttgattctcaagaagacatgggccaaggttgg
ggtggaagaggtagaccacgtggtggaccgccaagaggaggtcatgagagttatcaggat
ggtcagcggccagatcataatattcatgacagtccttctccagccagtagagagcgttcc
tcctctctacagggcatggatatggcctctctgccaccacgcaaacggccatggcatgac
ggaccgggcactggtgacatggactcctctggtgcagggcctgatgaccgaggagcaggt
cgaccgtcaccaagagacgaaggtgggtttggacctccatcaaggggaggaagaggaagt
tggggccgtggtggactgccaaacccaggtggccctggtcccaatttgggcccaaatatc
aggcgaggggctccacgtggtgttatgaggggaggtcggggacggtag
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integrated database retrieval system
