Carassius auratus (goldfish): 113115476
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Entry
113115476 CDS
T07313
Name
(RefSeq) 5'-3' exoribonuclease 1-like isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03008
Ribosome biogenesis in eukaryotes
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
113115476
09123 Folding, sorting and degradation
03018 RNA degradation
113115476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113115476
03009 Ribosome biogenesis [BR:
caua03009
]
113115476
03016 Transfer RNA biogenesis [BR:
caua03016
]
113115476
03036 Chromosome and associated proteins [BR:
caua03036
]
113115476
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113115476
mRNA degradation factors
5'-3' decay
5' exonucleases
113115476
Ribosome biogenesis [BR:
caua03009
]
Eukaryotic type
Pre-60S particles
RNases
113115476
Transfer RNA biogenesis [BR:
caua03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
113115476
Chromosome and associated proteins [BR:
caua03036
]
Eukaryotic type
Gene silencing
piRNA pathway
113115476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
113115476
NCBI-ProteinID:
XP_026138856
Ensembl:
ENSCARG00000014312
UniProt:
A0A6P6QZZ0
LinkDB
All DBs
Position
2:complement(11027044..11052592)
Genome browser
AA seq
1695 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDKSWQGVNVYLSGHETPGEGEHK
IMEFIRSETTRPGHDPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSELRNKISFEYNLERIIDDWVLMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPSLGGYLNENGHLNLANFEKYLEKLSEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEEAGVKDMKKSKSAEDSLCLAALGVDESHSTSGRGTEEDGE
DDDMFETEFRQYKRTYYMTKMGVEVVSDEFLANQAKCYVEGIQWILHYYYHGVQSWSWYY
PNHYAPFLSDVRNISSLKLAFDLGKPFMPFQQLLAVLPSASKELLPQCYQHLMTSPGSPI
VEYYPQDFKTDLNGKQQEWEAVVLIPFIDEKCLLAAMEPYTVKLTPSEKARNRHTECAVY
CFDKELDYVYNSPLLQLFPNILHCHVRQTPIPMDAWRVPLDYVGHRVDRGALYFCGFPTL
QHIRHKFYKKKTGVTVFQQSSRGENMMLEILASQELEQVEDVAALVLGKPLFVNWPHLTE
ARVVAVSDGETKFSLDEPSQVLYLGDTPPPTKVTRLTDKEQKDWVKDVQGLSEHFGKRKG
IVINETDVVVYGQLLTGRKYVIGQSGKVHLEKQFAKQVLPFPYQTVVKDIKAFDSSLARF
KTLEELFPPGTVVFMVGNPYYGAMGDVQDSSDVISEGRVRVVFSVPCEPQLDGLKQNQHK
YSVKYSPGYVLASRLGVTSYLVSRFSGSIFIGRGSKKNPHGEQKANVGLNLKFNKKNEEV
PGYTKRTEKEWLYSAAVEELLSEYLERFSELFDFVARNSHDDVFYEDDIWPGEDENGTEK
IQEIQGWLRNHPVSSSSRASCDLQILDAGIVEKIEEELEKTKAKKSNKKVRVTVKPHLVF
RPLEQQHGVVPDPDAEYHLFDRVVNVRESFSVPLGLRGTVIGIKGAEREAEVLYEVLFDE
EFAGGLTVRCSPGRGYRLPPSALINLSHGSRKEHGSHKLTAIVKPQPSSSSHYTHKSQLG
GLNHSPCSPFIPTQQQNGRQSFNLRADTQGNRNSPHKALSQKNQHKGSRNEKEFSNVWQS
LQSSGMPQKPPAHWQNKAGRSSGPMPHQQQLEGQSKQSQGNNPSSKLASGGNIRLLKRNE
DVNMDFVQRPSNKASTEFEELIANLKISKDSEHVQNHSPTEPKNQSGEPLSPQSFAMKGT
LVLKEMLKIDSGPSGPDCTGGQDPANPSVQQQGKRRSSKKLAARINSPQTDVPAAAPRPP
LAGQPPLLPSLATELGRVCMGLGMGPPEFAILHNRQSLTVCQVKLSNGLLVHGPQCQSET
EAKEKAALFALQRLNSLGALPLPPPIFPGVQQMRPLAPHPSMFGPPAGCLLMPPQGYGPL
HWGMQFPHQGQPFYGGTFPGAQAHVPLAPSGSHNQFVPLQVTKKRVSGRTKNQEAKEVSG
SSAYSGQTPSAGLAASPPMPESAPKTPPPISTHEPTDKSTPKTPRQNANPHTPGSASKRK
NRKLAVNFEAAKVTD
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgcctaaattttatcgctggatatcggagcggtatccgtgtctgagtgaagtt
gtcaaagagcatcagattccagagtttgacaacctttatttagatatgaatgggatcatc
caccagtgttcccaccccaatgatgaagatgtacacttccgtatttctgaagagaagatc
tttgctgacattttccactacctggaggtgctcttccgcatcatcaagcccaggaaagtg
ttcttcatggctgttgatggtgttgcacccagggccaagatgaaccagcagcgtggaaga
agattcaggtcagcaaaagaagctgaggagaaaatcaagaaggccttggagaagggtgaa
gtcttgcccacagaggccagatttgactcaaactgcatcacccctggaacggatttcatg
gccaggctgcaggaacagctgaaatattttgttcacaataaactgtccacagacaaatcg
tggcagggagtgaatgtgtatttgtctggtcacgagacccctggtgaaggagagcacaag
atcatggagttcattcgttctgagaccaccagaccgggtcatgacccaaacacaagacac
tgcctttatggtctggatgccgacctgataatgcttggcttgaccagccatgagcctaat
ttttctctcctcagggaggaggttcgcttcggaggcaaaaagtcacaaaagaggataaca
gctcctgaggagacgacctttcacctgctacatctttcccttatgagggaatacatcgac
tatgagttttcagagctcaggaataagatctcgtttgagtacaacctggagcggatcata
gatgactgggttctgatgggtttcctggtgggcaacgacttcatccctcatcttcctcac
ctgcacatcaatcacgatgcactgccgctgctctatcgaacttacatcagcgtgctgccc
agtctggggggctacctgaatgaaaacggtcatctcaaccttgccaactttgagaagtac
cttgagaagttgtcagaattcgaccgggagcatttcagcgaggtgtttgtagatctgaag
tggtttgagagtaaggtggggaacaaatacctgaacgaagcagccgggctggcagccgag
gaggccggtgtcaaagacatgaagaagagtaagtctgcagaagactccctgtgtctcgcc
gctcttggagtcgatgagtctcacagcacttcaggaagaggcacagaagaagacggtgaa
gatgatgacatgtttgaaacagagtttcgacaatacaagcgcacctactacatgaccaag
atgggcgttgaagtcgtctcagatgagtttttggccaatcaggctaaatgttacgtggag
gggatccagtggatcttgcattactactaccatggagttcagtcttggagctggtattat
ccgaaccactacgctcccttcctttctgatgtgaggaacatctctagtctcaagttggcc
tttgatttgggcaaacccttcatgccgttccagcagctcttggctgttctgccttcagcc
agcaaagagcttcttccacagtgttaccagcatctgatgacgtccccgggctcacccatc
gttgagtattacccacaagacttcaaaacggacctgaatggcaaacagcaggagtgggaa
gccgtggtgctcatcccatttatcgacgagaaatgcttgttagctgctatggagccctac
actgttaaactgactccatcagagaaggccaggaacagacatacagagtgtgccgtctac
tgctttgataaagagctggactatgtctacaactcccccctcctccagctctttcctaac
atcctccactgccacgtcaggcaaacaccgatcccgatggatgcctggcgtgtcccactg
gattatgtaggccatagggttgaccgaggagctctttatttttgtggcttccccacctta
cagcacatccgtcataaattttataagaagaaaactggagtgactgtgtttcaacaaagc
agcagaggggagaacatgatgctggagattttagccagccaggagctggaacaggtggaa
gatgttgcagctctggttcttggaaagcctttgtttgtgaactggccccatttgacggaa
gctcgggttgtagcggtttcagatggagaaacaaagttttctttggacgaaccatcacag
gtgctgtatctgggtgacaccccaccgcctactaaagtcacccgtctgactgataaagag
cagaaggactgggtcaaagatgttcaaggcctctcagagcacttcggcaagcgcaaaggc
attgtgatcaatgagacagatgttgtggtatacggccagctgctgacaggcaggaagtat
gtgattggtcagagcggaaaggtccatttggaaaagcagtttgccaaacaggtcctgccc
tttccataccagactgtcgtgaaggatatcaaagcgtttgattcatcattggctcgcttc
aagacactggaggagctgtttcccccaggaactgttgtctttatggttggaaacccatat
tacggtgcaatgggagatgtgcaagattctagtgacgtcatcagtgaggggcgggtcaga
gtggtcttctctgtaccgtgtgaacctcagcttgatggcttaaaacagaaccagcataaa
tactctgtgaagtacagtcccgggtacgtgcttgcctcccgccttggtgtcaccagctac
ctcgtctcacggttctccggaagcatcttcattggaagaggatccaagaaaaatcctcat
ggagagcaaaaagccaacgtgggtcttaatctcaagttcaacaagaagaacgaggaagtt
ccaggctacaccaagagaacggagaaagagtggctctactcggctgctgtagaggaactc
ttatctgaatacttggagagattttcagagctgtttgactttgtagcacgaaacagtcac
gatgacgtcttttatgaagatgacatctggccaggagaagatgagaatggcactgaaaag
atccaggagatccagggctggctgagaaaccatccagtcagttcctcttcccgagcttca
tgtgatctgcagatcctggacgccggcattgtggagaagattgaagaagagctggagaaa
acaaaagcaaagaagtcgaacaagaaagtacgggtcactgtgaagccccacttggttttt
aggcctttggagcagcagcacggtgttgttccagatcctgacgcagagtaccatctgttt
gaccgtgtggtcaatgtgagagaaagcttctctgttcctctcggccttcgaggaaccgtc
attggcatcaaaggagctgagcgcgaggctgaagttctgtatgaagtgctgtttgatgag
gagtttgctggaggactcactgtcaggtgctctccgggacgtggctatcgactgcccccc
agtgccttaatcaacctgagccacggcagcagaaaggagcatggctctcacaaactcact
gcgatcgtcaaaccccagccctcatcctcatctcattacactcacaagagtcagctggga
ggccttaaccactcgccatgctcaccgtttatacctacgcagcagcagaatggtcgacag
agttttaatctcagggccgacactcagggcaacagaaactcacctcacaaagccctcagc
cagaaaaaccaacacaagggctctaggaatgagaaagagttcagtaatgtttggcagtct
cttcagagttcaggaatgccccagaaaccaccggctcactggcaaaataaggctgggaga
agcagtggaccgatgccacatcagcaacagctggaaggacagagcaaacaaagccaaggc
aacaacccatccagcaaacttgcctccggtggcaatattagacttctgaagagaaatgag
gatgtgaatatggatttcgtgcaaaggccttcaaataaggcatctacggaatttgaggag
cttatagccaatctgaagatctcgaaggattctgagcatgtccagaatcattcacctaca
gagcccaagaaccaatcaggagagcctctttccccacagtcctttgccatgaaaggaact
ctggtgttgaaagaaatgttgaagattgactctggacccagtggccctgattgcaccggt
ggccaggatccagcaaaccccagtgttcagcagcagggcaagaggcgctccagcaaaaaa
ctagctgctcggataaatagtcctcagactgatgttccagcagcggctcctcgtcctcct
ttggctggccagccacccctcctgcccagcctggccactgaactcgggcgtgtgtgcatg
ggccttgggatgggacctccagagtttgccatcctccacaacagacagagtctgacagtg
tgtcaggtgaagttgtctaatggcctgctggttcacggtcctcagtgtcaatctgaaact
gaagctaaagagaaagctgctctctttgcccttcaacgattgaactcactgggtgcattg
ccactccctcctcccatattccccggagtccagcagatgaggccacttgcacctcatccc
tccatgtttggtcccccggcaggttgtcttctgatgcccccacaaggctatggacctctt
cattgggggatgcagtttccccaccagggccagccgttctatggggggactttccctgga
gcacaggcccatgtgccattagcacccagcggatcccacaatcagtttgttcccctacag
gtgaccaagaagagagtttcaggcaggaccaagaaccaagaggccaaggaagtgtccggc
agctctgcctattctggccagaccccaagcgctggactggctgcttctcccccaatgcct
gaatcagcccccaagacccccccacccatcagcacccacgagcccacagataagtccacc
cccaagacgcccaggcagaacgccaatcctcacacgcccggctcggcctccaagcggaaa
aaccggaaactggcggtcaatttcgaggctgctaaagtgacggactga
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integrated database retrieval system
