Carassius auratus (goldfish): 113115783
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Entry
113115783 CDS
T07313
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113115783
09123 Folding, sorting and degradation
03018 RNA degradation
113115783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113115783
03041 Spliceosome [BR:
caua03041
]
113115783
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113115783
mRNA cycle factors
Stress granule specific factors
113115783
Spliceosome [BR:
caua03041
]
Complex C
Other components
Complex C specific factors
113115783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_5
RRM_3
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
113115783
NCBI-ProteinID:
XP_026139184
Ensembl:
ENSCARG00000006050
UniProt:
A0A6P6R2P2
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All DBs
Position
16:3798616..3806093
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AA seq
632 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHSDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AEMGARAKEFTNVYIKNFGEDMEDEKLREIFSKFGPALSIRVMTDDGGKSRGFGFVSFER
HEDAQRAVDEMNGKELNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFAPFGTITSAKVMMEGGRSRGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTSQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWATQGVRPQHFQGMPNAVRPSGPRPQTFGAMRPASQVPRVMAPQ
RIASQAMGPRPSGAGAATGAAQVRGVPQYKYAPGVRNTQQHMPSQPQVPMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKETAQKTPSAPVPAV
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcgcccagttacccgatggcctctctgtatgtgggggatctacactcg
gatgtgaccgaggccatgctgtacgagaagttcagtccagccggacccatcctctccatc
cgggtctgcagggacatgatgacgcgccgctcgctcggttacgcctacgtcaacttccag
cagcccgccgacgccgagcgcgccctggacacgatgaactttgacgtgatcaagggccgt
ccgctgcgcatcatgtggtcccagcgagacccgtccctgcgcaagagcggcgtgggaaac
atcttcatcaagaacctggacaagtccatcgacaacaaggccctgtacgacacgttctct
gccttcggaaacatcctgtcctgcaaggtggtttgtgatgagaacggctctaaaggatac
ggctttgtgcactttgagacccacgaggctgcagaaagagccattgagaaaatgaacggc
atgttgctcaatgaccgcaaagtgtttgtgggacgcttcaagtctcgtaaggagcgcgag
gcagagatgggcgcccgcgcaaaagagttcaccaacgtttacatcaagaacttcggagaa
gatatggaggacgagaagctgagggagattttcagcaaatttggtccagcgctcagtatt
cgagtcatgacggatgacggcggtaaatctagaggctttgggttcgtcagcttcgagagg
cacgaggacgcccagcgggccgtggatgagatgaacggaaaagagctgaacgggaagcag
gtgtacgtggggcgcgctcagaagaagggagagcgtcagacggagctcaagcgcaagttt
gagcagatgaagcaggaccgcatgacgcgctaccagggagtcaatctctacgtgaaaaac
ctggatgacggtctggatgacgaacgtctgcgtaaagagtttgctccgtttggcaccatc
accagtgctaaggtgatgatggaaggtggccgcagcaggggcttcggcttcgtctgcttc
tcatctcctgaagaagccactaaagcggtgacggagatgaacggtcgtatcgtggccacc
aagccgctgtatgtggctctggctcagaggaaggaggagcgtcaggctcatctcaccagt
cagtacatgcagaggatggccagcgtcagagccgtgcccaaccccgtcctcaacccctac
cagccagcgccaccttcaggatacttcatggctgcgatcccacaggctcagaatcgtgct
gcttactatcccaccagtcagctcgctcagctccgccccagtcctcgctgggccactcag
ggggtccgccctcagcatttccagggcatgccgaacgccgtcagaccctcggggccgcgt
cctcagaccttcggtgccatgcgtcccgcctcccaggtcccacgggtgatggccccccag
cgcattgcatctcaggccatgggtcctcgtccctccggtgcaggcgcagccacaggtgcg
gctcaggtgagaggagtgccacagtacaagtacgcacctggagtccgcaacacacagcag
cacatgccctctcagccgcaggtgcccatgcagcagcctgcggtccacgttcagggtcag
gagcctctgacggcgtccatgctggctgccgcccctccacaagaacagaagcagatgctg
ggtgagcgtctgttcccgctcatccagaacatgcatcccagtctggctgggaagatcacc
ggaatgctgctggagatcgacaactctgagctgctgcacatgctggagtctccggagtcc
ctgaggtcaaaggtggatgaagcggtcgcagtgctgcaggctcatcaggccaaagaaact
gctcagaagacccccagcgcccctgtgccggccgtctaa
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