Carassius auratus (goldfish): 113115791
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Entry
113115791 CDS
T07313
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113115791
09123 Folding, sorting and degradation
03018 RNA degradation
113115791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113115791
03041 Spliceosome [BR:
caua03041
]
113115791
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113115791
mRNA cycle factors
Stress granule specific factors
113115791
Spliceosome [BR:
caua03041
]
Complex C
Other components
Complex C specific factors
113115791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
113115791
NCBI-ProteinID:
XP_026139196
UniProt:
A0A6P6R108
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All DBs
Position
16:3788365..3796414
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AA seq
533 aa
AA seq
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MKMKVKVSSSLYVGDLEPDVTEAMLFERFRSLGSVQSIRVCRDRLTCRSLGYAYVNFERA
ADAERALDTMNFDLMQGKPMRLMWSQRDPWLRKSGVGNVFIKNLEKSIDSEALYDIFSSF
GTILSCKVVCDENGSKGFGFVHFETHEAAGKAIEKLNGMLINEQKVFVGHFKSQKEREAE
MQARNKEFTNIFIKNFGSDVDDEMLTEIFGKFGPTLSVRVMTDEKGQSRGFGFVSFEKHS
DARRAVEELNRTELSGRKVFVGRAQKRRERQTELKKHFQQIQQEHIMRCQGVNLYVKNLS
DSVDSERLFREFSPYGNITSAKVMTDGGRSRGFGFVCFSSPEEATRAITEMNCRIIESKP
IYVALAQRKTDRQALLIHQHMMRRQQQVQNLSSFSFTQPQCVSPQVDLSVWSAAQDIYTP
EGHHHHEFTSDAQQTWAVQQVQETLSSPVSSSGENQKQMLGLSLFPLVQDVVGPLANQIT
EMLLETDESELLLLLRCQQSLCIKVNEALAVLQSHQPMEAAQISFSSPALQAV
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaaggtgaaggtgagcagctcgctgtatgtgggcgatctggagccggacgtg
actgaagccatgctgttcgagcgattcagatcactcggttcggttcaatcgatccgagtc
tgcagagaccgactcacctgccgctcgctcggatacgcgtacgttaacttcgagcgagcc
gctgacgccgagcgagccttggacaccatgaactttgacctcatgcaggggaagcccatg
cgtctgatgtggtctcagagagacccttggctgaggaagagcggcgtgggaaacgtcttc
atcaagaacctggagaaatccatcgacagcgaggctctgtatgacatcttctcctccttc
gggaccatcttatcctgtaaagtggtttgtgatgaaaacggatcgaaaggctttgggttt
gtgcactttgagacgcatgaagctgctggaaaagccatcgagaaactaaacggcatgttg
atcaatgaacagaaggtgttcgtgggacacttcaagtcccaaaaggagcgcgaggctgaa
atgcaggcgagaaacaaagagttcacaaacattttcatcaagaacttcgggtcggatgtg
gacgacgagatgctgacggagatattcggtaaattcggcccgactctgagcgttcgggtc
atgacggatgagaagggacagtccagaggcttcggtttcgtcagctttgagaagcacagc
gatgccagacgggcggtggaggagctgaaccggacggagctgagcggcagaaaggtgttt
gtgggccgtgctcagaagagacgagagcgacagacggagctgaagaagcacttccagcag
atccagcaggagcacatcatgcgctgtcagggcgtgaatctgtacgtgaagaatctgagc
gatagcgtggacagcgaaaggttattcagagagttctctccgtacgggaacatcaccagc
gctaaggtgatgacagacggaggccgcagccgaggcttcggattcgtctgcttctcgtct
cctgaagaagccaccagagccatcactgagatgaactgtcgcatcatcgagtccaagccc
atatatgtggctctggcccagaggaagacggatcgccaggctctgctcatccaccaacac
atgatgagacgccagcagcaggtgcagaatctctcttcattcagcttcacccagcctcag
tgcgtcagtcctcaggtggatctcagtgtgtggtcagcagcgcaggacatctacacgcct
gaaggtcaccatcatcacgagttcactagtgatgcacagcagacgtgggctgttcaacag
gtccaggagactctgagctcccccgtgtccagctcaggagaaaaccagaagcagatgctg
ggtctcagtctcttcccgctggtgcaggatgtggtcgggccgctggcgaatcagatcaca
gagatgctgctggagacggatgagtctgagctgcttctgcttctgcgctgccagcagtct
ctgtgcatcaaggtgaacgaagcgcttgctgttcttcagtctcatcagccgatggaagcg
gctcagatatcgtttagcagccctgctcttcaagccgtctga
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