Carassius auratus (goldfish): 113115882
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Entry
113115882 CDS
T07313
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113115882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caua03021
]
113115882
03036 Chromosome and associated proteins [BR:
caua03036
]
113115882
Transcription machinery [BR:
caua03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113115882
Chromosome and associated proteins [BR:
caua03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
113115882
PBAF complex
113115882
GBAF(ncBAF) complex
113115882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
113115882
NCBI-ProteinID:
XP_026139370
Ensembl:
ENSCARG00000022632
UniProt:
A0A6P6R351
LinkDB
All DBs
Position
16:5482252..5498270
Genome browser
AA seq
1100 aa
AA seq
DB search
MATAATAAGGTGSGGPSAGQAGAGSSIGRKKDGGPSSKFWESSETVSQLETVRLWIGKHY
KKYVQNDSPTCKTLAALVVQLLQFQEDAFGRRVSNPALTKLPAKSFLDFKPGGALCHILG
SAYKSKSEQGWRRFDLQNPSRMDRNVEMFMTIEKTLVQNNSLSRPIVYIVSDMEQKQANK
LKDIIKRHQGTITEDKSKATHIIYPSPAQVEEEEWLRPVMRKDKQVLVHWGYYPDSYDTW
VSTNDVDGDVEDPPSSEKPWRVHAKWVTDTDAFNEWMNEEDYEVDENKKPVSFRQRIFPG
EEVSSRTPDRKDRKSLVAGKKRRRSPSPPSTPAESRKKGKKGNPGSQGRRRGHQNDDEQD
EDLTKDLEDPSPVPGMEDVTLPKNVNQKKDSENTPVKGGTVADLDDQGDDSLASGGKEED
EQGKIVVNRLIDSEDNVTEQTHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTPE
IYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRAHAFLEQWGLVNYQVDSESRP
LPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPPAQQMLNFPEKGKDKPTDLQNFGLRTDI
YSKKNPKGKGAAGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI
EDQYLESSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFSRVR
EEVPTELVEAHVKKVQEAARSSGKVDPAFGLENSGIAGTAPEEPEKTEPTETEKMDTDSD
SQPDKAESKDEAEKPSESAEKPTETEKDKNETSEKSEPQEEEESEGGEPKTEKDKEEDME
TTEEGKEGEEEKEEGKKKLELDIGEGNISTAAAAALASAATKAKHLAAVEERKIKSLVAL
LVETQMKKLELKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQQM
EQQAAAQQNAGGHHGPAPHGPPPHGPPPGMHPGHPGHPGHPGPGYPPMHHPMGPLHAPQT
GPMVGPGQPMPGQPMPGRMMPGPPPVGPSQGGMLPMMGPRHPGPPNGMYPGPPPTAQPDG
IPPGPVGPSVSAPPPRAAEN
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcgactgcagcgggcggaacgggctccggaggaccatcggctggacag
gcgggcgccggttcctcgatcggacggaaaaaagacggagggccgtcttccaaattttgg
gagagctcggaaacggtgtcccagttggaaacagttcggctgtggatcgggaaacattat
aagaagtatgtccaaaatgactctcctacttgcaaaacgttggccgcgctggtggtgcag
ttgctgcagtttcaggaggatgcatttgggcgtagagtcagcaatcctgcccttaccaaa
ttacccgcaaagagctttctggatttcaaacccggaggagccctttgccacattctgggt
tctgcatacaagtccaaaagcgagcagggctggaggaggtttgatctgcagaacccatcc
agaatggatagaaacgtagagatgttcatgactatagagaagactcttgttcagaacaac
tctttgagccgaccaatcgtatacattgtgtctgacatggagcaaaagcaagccaacaag
ctcaaagacatcatcaagagacatcagggcaccatcactgaagataagtcaaaggccact
catattatttacccctccccagcccaggttgaagaagaggaatggctacgtcctgtcatg
cgcaaagacaaacaagttttggttcactggggttattaccctgacagttatgatacgtgg
gtatcaacaaatgatgtggatggagatgttgaggatccaccaagttctgagaaaccatgg
agggtgcatgctaaatgggtcaccgacacagatgctttcaacgagtggatgaatgaggaa
gattatgaagtggatgagaacaagaagcctgtgagtttccgccagcggatcttcccaggg
gaggaagtgtcttcccgtacacccgatcgcaaggaccgcaagtccctggttgccggcaag
aagaggcgacgctctccatccccacccagcacccctgcagagtcccgcaaaaagggcaag
aaagggaatcctggatcacaggggagacgccgtggacatcagaatgatgacgagcaggat
gaagacctcacaaaggacctggaagatccctccccggtaccaggaatggaggatgttaca
ttgccaaagaatgtcaatcagaaaaaggacagtgagaacacgccagtgaaaggtggaacg
gttgctgatttggatgaccagggagatgattcactagcatctggtggcaaggaagaagat
gaacagggcaaaattgtggtcaatcgtctgattgactctgaggacaatgtgactgaacaa
acccatcacatcattatacccagctatgctgcctggtttgactacaacagtatacatgaa
attgagaggcgtgccctgccagagttcttcaatggcaaaaacaaatctaagactccagag
atctatctggcttatcgtaacttcatgattgacacgtaccggctgaatcctcaggagtac
ctgacctccacctcctgcaggagaaaccttactggagatgtgtgtgcggtcatgagagcg
catgcctttttggagcagtgggggctggtgaactatcaggttgattctgagagcagaccc
cttcccatgggtcctccaccaaccccacatttcaatgttctggctgatactccctctggc
ttggtgccgctgcaccaccgccccccgcaggttcctcctgctcagcagatgctgaacttc
ccagagaagggcaaagacaagccaactgacctgcagaactttggcctccgtacagatatt
tactcaaagaagaatcccaagggtaaaggggctgcaggtgggagagagtggactgagcaa
gaaacattgcttctgttggaggctctggagatgtataaggatgactggaataaggtttcg
gagcatgtgggcagccgtacacaagatgagtgcatcttgcacttcctgcgtctgcccata
gaggatcaatacctggagagttctgaagcctcactaggccccttggcttaccagccgatc
ccctttagccaatcaggaaatcctgtcatgagcactgttgcattccttgcctctgtggtc
gacccacgcgttgcggcagctgctgccaaagcggctttggaggagttctcgcgtgtgcgt
gaggaggttcccacagagctggtggaggctcatgtgaagaaggtacaagaagccgcgcgc
agctcaggaaaagtagaccctgcgttcggcctggagaacagtggcattgctggtacagcc
cctgaggaaccagagaagacagaacccacagagactgagaagatggacactgactcggat
tcccagcctgataaggcggagtcaaaggatgaagcagagaagcccagcgagtctgcagag
aagccgacagagacagagaaggataagaatgagacctcagagaaatctgagccgcaggaa
gaggaagagagcgagggaggagaacccaagacagagaaagacaaagaggaggacatggag
accacagaggaagggaaagagggtgaggaagaaaaggaggaaggaaagaaaaagcttgag
ttggatatcggagagggcaacatctccactgctgccgctgctgctctggcctctgctgcc
accaaggcaaagcacctggctgcagtggaagagaggaagatcaaatctcttgtggctctc
ctggtagagactcagatgaagaagctggagctcaaactcagacactttgaggagctggag
accatcatggaccgtgagaaagaagcactagagctccagaggcagcagcttttgacagag
cgacaggcgttccacatggagcagttaaaatatgctgagatgaaggctcgtcagcagatg
gaacagcaggcagctgcacagcagaatgcaggaggacatcacggaccagctccacatggc
ccacctccgcatggtccacctccaggcatgcaccctggacacccaggacatcccgggcac
cctggccctggatatccccccatgcaccatcccatgggtcccctccatgcccctcagaca
ggaccaatggttggaccaggccagcccatgccaggtcagcctatgccaggccgaatgatg
cctggacctcccccagttggaccctcacagggtggcatgctgcccatgatgggccctcga
caccccggaccacccaacggcatgtacccaggtccacctccaaccgcacagcctgatggg
attccccctggcccagtgggaccttctgtatctgcgccccctcctcgtgctgctgaaaac
taa
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