Carassius auratus (goldfish): 113116319
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Entry
113116319 CDS
T07313
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
caua00535
]
113116319
Proteoglycans [BR:
caua00535
]
Extracellular matrix (ECM) proteoglycans
Others
113116319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
DUF4998
FN3_Tor_3rd
DUF4959
VWA_3
Motif
Other DBs
NCBI-GeneID:
113116319
NCBI-ProteinID:
XP_026140192
Ensembl:
ENSCARG00000042027
UniProt:
A0A6P6R3Q5
LinkDB
All DBs
Position
16:complement(16553111..16662609)
Genome browser
AA seq
1876 aa
AA seq
DB search
MRVSGSRIKLWCLLISLALIQFLAPVSAQVPGPRRLRFKVLSEGRLLVSWKEPKGEYEGY
KFTYNSEPGGETTELQIAKGENKAIIKDFNPRKEYSVKVIAVSGNLRSRALQGKYTAEDQ
SSDRDTTQPQRQKEPGPVDEGNEISGADQFVCTTSAIADIVILVDGSWSIGRINFHLVRV
FLENLVNAFDVGIDKTRIGLAQYSGDPRIEWHLNGFSTKDAVIDAVKNLPYKGGNTLTGL
ALTYILENSFKPESGARSDVPKIGILITDGKSQDDVIPPAQTLRSAGVELFAIGVKNADE
NELKAIASEPEETHVYNVADFSIMSTIVAGLTKKVCDGVEQQDKDIKRDSPTEETPSPPQ
DLVTSEVTAHSFRVSWTHASGSVEKYRVVYQPIGADVLDEIVVGGTENSVVLQNLNSLTE
YEIAVFAVYRSAASDALRGSEITLALPTVSDLEVYDVTDNSMRARWRDAEGASGYMILYA
PLSSETTDERELTVDESVTDVGLTGMIPDTEYTVTVYAMFREETSDPVTVQETTMSLRPP
RNLRVTEVDHSSVRLNWDAVSRKVKGYRVVYMKTDGVQTSQVDLVPVTNVYLKNLSPLTE
YTVEVFALYDAGQSEALSGRFNTKLVPAPFRLMTSEVTSESFRVSWSHPARDVVLYKMAW
SPTEGGQEMEIMLNSAEDSYVIQDLSPFTEYKVSLSAIYKDEMESSPALVLEKTLDWTTE
APTTFPSTTAFVRLGVSNLWVDEETPFSLQVNWEVLDSDVEQYKVTYVSADRTEETVLVS
GNRRSVILQPLLSDTRYKITVTPIYADGESTALSKVSTGKTLPLSGPSNLRVSDEWYNHL
RISWDGPQFPTLGYRVIYQPISVSGPALETFVGDDVNTLLILNLLSDTEYSVQVIASYTT
GSSQPLTGKGKTLFLGVKNLSTYKVLSSSLCAQWQPHRHASVYRVVIESLLNGQKQEVRV
DGGESRECFFNLTPNTQYKISVYTLLMDTEGSVVTTMATTAPAPTQPPTAPPTTIPPPTI
PPAKEVCKAAKADLAFLVDGSWSIGDDNFQKIIRFLYSTTGALDVIGPEGTQVAIVQFSD
DARTEFKLSSYSDKEVLLDAVQRITYKGGNTKTGRAIKHVKEAIFAEDAGVRRGIPKVLV
VLTDGRSQDDVNKISKEMQMEGYIIFAIGFADADYGELVNIASKPSERHVFFVDDLDAFK
KIEEQLITFVCEAATATCPSMLMSGNTLAGFRMMEMFGLVEKHYSSVQGVSMEPGTFNSY
PCYRLHKDALVSQPTRYLHPEGLPSDYTISMLFRILPETPQEPFALWEILDKNNEPLVGI
ILDNGGKTLTFFNYDYKGEFQTVTFEGSEIKKIFYGSFHKLHVAISKTAAKIVIDCKTVG
EKSINAAGNITMDGVEVLGRMVRSRGRRDNSAPFQLQMFDIVCSTSWASRDKCCELPGLR
VEEDCPAMPHACTCAQDSKGPPGPSGPPGGPGIRGSRGDRGEPGLTETAGHSHFVSAARL
VGPQGPPGEIGPPGPQGPPGPQGPNGMSIQGPPGAPGEKGEKGEIGVPGPQGVPGASGGP
GRDGPPGQRGLLGKDGPQGRPGPPGPMGSPGAPGAPGPSGSPGQMGDQGTAGPPGAKGER
GERGTMQSQAAVRAIARQVCEQLIQSHLSRYNSVLNQIPSQSVSVRTVPGPPGEPGRLGP
PGPQGEQGPPGRPGFPGASGQNGRPGERGLPGERGEKGSPGIGTQGPRGPPGPPGPPGEG
RTGSQGPPGRPGIQGTSGRPGIPGSPGPAGPPGYCDQNSCIGYNVGVKQLPSNPYQNYGP
ATNYNNDEEEEDPYGGYHAYPPQYYQPSYPDPRAARFGPAHPGDTVGMRSPGTGRFSRST
AEEGSVNESEVQVKAE
NT seq
5631 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtgtcgggatcgaggattaagctgtggtgtctgcttatctcgctggcactgatt
cagtttctcgcccctgtttcggctcaagttccaggtccgagaagacttcgatttaaagtc
ctgagtgaaggcaggctacttgtctcatggaaggaaccaaaaggagaatatgaaggctac
aaatttacatataatagtgaaccaggtggggaaacaaccgagttgcaaattgcaaaggga
gagaataaagcaataataaaggattttaatcccaggaaggagtattcagtcaaggttata
gctgtgagtggaaacctgcgcagccgagcacttcagggaaaatatactgcagaagaccag
agcagtgatagagacaccactcaacctcaaagacagaaagaaccaggacctgtggatgag
ggcaatgagatctcaggagcggatcagtttgtctgcacaacatctgccattgcggatatt
gtcatcctggtcgatggatcttggagtatcgggcgaatcaatttccatttggttcgcgtg
tttcttgaaaacctggtcaatgccttcgatgtgggaatagacaaaacccggattggactg
gcccagtacagtggcgatccacggattgagtggcacttgaatggcttcagtacaaaagat
gcagtaatagatgctgtcaaaaacctgccgtacaagggaggcaacactctcacaggtctt
gctcttacctacatcctggagaacagcttcaaacccgagtctggggctcgtagcgatgtt
cccaaaattggaattctgataactgacggcaaatcccaggatgatgttatcccacctgct
cagaccctgagaagtgctggagtggagttatttgccattggtgtgaagaatgctgatgag
aacgagctgaaggccatcgcctctgaaccagaggaaacacacgtttataatgtggcagac
ttcagtatcatgagcactattgtagcaggtttgaccaaaaaggtgtgcgatggagtggaa
caacaagacaaagatattaaacgagattctcccactgaagagacgccatctccgccccag
gacttggtcacttctgaggtgaccgctcacagtttccgtgtctcttggactcatgcgtct
ggcagtgtggaaaaatatcgggttgtttaccaaccaattggagcagatgttctggacgag
attgtggtgggcggcacggagaattcagtcgtcctgcagaatttgaactctctgactgaa
tacgagattgctgtgtttgctgtgtaccgcagcgcagcgagtgacgctctgagaggcagc
gagatcacacttgctctacccacagtgagtgatctcgaggtgtacgatgtgacagacaac
agcatgagagcccgctggagggatgcagaaggggcttctgggtacatgatcctttacgct
ccactgagcagtgagactacagatgaaagagagctaacggtggacgagtcggtgactgat
gtgggactgactggaatgattcctgacacagagtacaccgttacggtctatgccatgttc
agagaggagaccagtgatcccgttactgttcaggagaccaccatgtccctgagacctcca
cgtaacctgcgggtcactgaagttgaccacagctcagtgcggctcaactgggacgcagtg
tccaggaaggttaagggctaccgtgtcgtgtatatgaagacagatggtgttcagaccagt
caggtggatttggttccagtcaccaatgtgtacctgaagaacctgtcacccttaacagag
tacaccgtggaagtttttgctctttacgatgctggccaatcagaggcgctgagtggtaga
ttcaatacaaagcttgtgccagccccattcagactgatgacatcagaggtgacctcagag
agtttccgggtcagctggtcacatcctgccagagatgtggtgctctataagatggcctgg
tcacccaccgaaggaggacaagagatggagatcatgctgaatagtgctgaggactcatat
gtgattcaagacctgagtccttttacagagtataaggtgtcactctcagccatctataaa
gacgaaatggagagcagccctgcgcttgtgcttgagaaaacattggactggaccacagaa
gctcccaccacttttccctcaactacagcatttgttcgtttgggagtgagtaacctgtgg
gtggatgaggagacacctttcagtttgcaagtgaactgggaggtgctggactcagacgtg
gagcagtacaaagtgacatatgtcagtgcagaccgcacagaagagacagtgttagtctcg
ggaaacagaagaagcgtgatcctgcaacctctcctctcagacacaaggtacaagatcaca
gtgacccctatctatgcagatggagagtccacagctctgtctaaggtctctaccggcaaa
acattgccactctctggacccagtaacctcagagtctctgatgaatggtataatcacctc
cgcatcagctgggatggccctcagttccccactttaggttacagagtcatctatcagccc
atttctgtgtcaggtccggctctagagacgtttgtaggggatgatgtgaacaccctgctg
atcctcaatctgttgagtgacacggagtacagcgttcaggtcatcgcctcctacaccacc
ggctccagccaacccctcaccggcaagggcaaaacactgttcctgggggtgaagaatctc
agcacgtacaaggtgctcagtagcagcctgtgtgcccagtggcagcctcaccgtcacgcc
agcgtctacagagtcgtcatcgagtcactgctcaacggacagaaacaggaagtgagggtc
gatggcggtgaatccagagagtgcttcttcaatcttacccccaacacccagtacaagatc
agcgtctacactctcttaatggacacagaaggttctgttgtcaccaccatggcaacaacc
gctccagcacccacccagccaccgaccgcaccacccaccaccatccctcctcccaccatc
cccccagccaaagaagtttgcaaggcagccaaggcagaccttgccttccttgtagatggc
tcctggagtatcggagatgacaactttcagaagattatccgattcctgtacagcacaact
ggtgcacttgacgtgattggccccgagggaacacaggtggccattgttcagttcagtgat
gacgccagaaccgagttcaagctcagctcctacagcgataaggaggttctgctggacgcc
gtgcagcgcatcacctacaagggaggaaacaccaagacaggtcgcgccattaagcatgtg
aaggaggccatctttgctgaggacgcgggcgtaaggagaggcattcctaaagtgctggtg
gtgctcacggatgggcgatctcaagatgatgtcaacaagatctcgaaggagatgcagatg
gagggctacatcatctttgccattggcttcgctgatgctgactacggggagctggtgaac
attgccagcaaaccaagcgagagacatgtgttctttgtggacgatctggatgccttcaag
aaaattgaagaacagctcataacttttgtttgtgaggctgcgactgccacttgcccctcg
atgttaatgagcgggaacactttagctggcttccgtatgatggagatgtttggtttggtg
gagaagcactacagcagtgtgcaaggtgtctcaatggagcctgggactttcaacagctac
ccctgctatcggttgcacaaggacgcgctcgtctctcagcctaccaggtatctacatccc
gaaggccttccctctgactacactatatcaatgcttttccgcatactgcctgaaactcct
caggaaccttttgcattgtgggaaatccttgacaaaaacaatgagccacttgtgggcatt
atcctggataacggagggaaaacattaacctttttcaattacgactacaagggagaattt
caaacggtgactttcgaaggaagtgaaattaagaagattttctatggcagtttccataag
cttcatgtggccatcagcaaaactgctgctaaaattgtgattgactgcaaaacggtggga
gagaaatccatcaacgccgcagggaacatcaccatggatggagtggaggttctgggacgc
atggtccgctcacgtggaaggagagataactcagcgccgtttcagctccagatgtttgac
atagtctgcagcacatcatgggccagtcgggacaagtgctgtgagctcccaggcttgaga
gtcgaagaagactgtcctgccatgccccatgcctgcacctgtgctcaggacagcaaagga
ccacccggaccctcaggaccaccgggcggtcctggtatcagaggttcaagaggagatcgg
ggggagccaggcttgacggagactgcagggcattcacactttgtttcagcagcccggctg
gtggggcctcaagggccacctggtgagatcggacctccaggaccgcaggggccaccgggt
cctcaggggccgaatggaatgtccattcaggggccaccgggggctccgggtgaaaaagga
gagaagggtgaaataggtgtgccgggtcctcagggtgtaccaggtgccagtggaggacca
ggccgagatggacctccaggacagagaggcctactgggtaaggatggaccccagggaaga
ccgggccctccaggaccaatgggaagccccggagctcctggggctccaggaccgagtgga
tctccagggcaaatgggtgatcaggggacagctgggcctcccggcgccaaaggcgaacga
ggagagcgaggtactatgcagtctcaggccgctgtccgtgccatagcgcgacaagtttgt
gaacagctaattcagagtcacttgtctcgctacaactctgttctgaaccagattcccagt
cagtctgtttcggtacgaacagtaccaggtccaccgggtgagcctggtcgactgggacct
ccggggccccagggagaacagggacctcctggcagaccaggattccctggagccagtggg
cagaatggccgtccaggagagagaggtctcccaggagaaaggggagagaagggcagtcca
gggattgggacacaaggccctcgtggtcctccagggcccccagggcctcctggagaaggt
cggacaggaagtcagggccctccagggagacctggaattcaaggcacctcaggacgtcca
ggtatccctggtagccctggtcctgctggaccccccggctactgcgaccagaactcctgc
atcggatacaacgttggagtaaaacagttaccctccaacccctaccaaaactatggcccc
gccaccaactacaacaacgatgaggaggaagaggacccttacggtggctaccatgcctac
cctcctcagtactatcaacccagctatcctgacccccgtgccgccaggttcggccccgcc
caccctggtgacacggtggggatgaggtcacctggcactggtcgcttctcccgcagcacg
gccgaagaaggcagcgtcaatgagtcagaagtgcaagtgaaggccgaatag
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integrated database retrieval system
