Carassius auratus (goldfish): 113116990
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Entry
113116990 CDS
T07313
Symbol
scaf8
Name
(RefSeq) protein SCAF8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caua03021
]
113116990 (scaf8)
03041 Spliceosome [BR:
caua03041
]
113116990 (scaf8)
Transcription machinery [BR:
caua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113116990 (scaf8)
Spliceosome [BR:
caua03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
113116990 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
113116990
NCBI-ProteinID:
XP_026141109
UniProt:
A0A6P6R5M3
LinkDB
All DBs
Position
17:3485701..3527361
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AA seq
1284 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVVDSIVRQSRHQFGQEKDVFAPRFSKNIINTFQNLYRCPADDKSKIVRVLNLWQKN
NVFKSDIIQPLLDMAAGHPPPSVTPVSASSAVPVNSTTPGTPATPATPANIVQSLPDWAS
QISNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAAANTLNPLEQRVSSFNKKLLGQFDFGNESEHSEDSKKDATSSQLPVVPESINNSIF
HQLAEHLQQQNLEQFQKQLMEHQQHQQKSMTMESQDALFGSENSAPPGQSSAPPQLPEQE
AKMDDSIDNQQQDMDIDEGQDTVDEELFEAEEKKTSSTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSRVLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLGTGSYKIG
SKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGMIDQETVNNEWE
SQRNTETTKETPSQAVTAETSTASSTPSEAFTQPVTMMPMQIPVAQTVPAVGLMPPSFPV
TMTMPPPGFGPPPPFLRAGFNASQPPPGFMATPGVGPSAVGTSLASAQTSLVQPSLPTTQ
ENSKDSPFGAMIPPTSTIPGSFISSAMPGAGVFNPVGAQHQQSSTDKMPQSAETMETASE
MTLQGMQNAVRSRMGLLGMHPSASLTHPLSGQRMAGLLPLELRPNLLQGHGGRFPLLMQP
GLAHQTNNILDASLQAQARVRVPFSQMEQFNRAESTFSRAPNPSSAGAESLAKTDNETPP
RSDGGAQQEGDQDYRFPPPEKQSTGLLKTPPLEMRTEPVPPRPPLLERPPRTVMQAEGRE
GRRENMSGGFRAESRWGPPRGDFDERDMRGMSGGPPKGFQEDRSNPNFQNRFEGRSGGSS
GPAWNRGTGPSFNANMHQDYDDRRRPWDRDDRDMDFRGEMNGNRQSRERDRERERERDRN
RDRERGRERNRERDRERERERENEKDKERWTPVSSQSQPQPLLPKSQPLLPLPTPSIALP
HAQKQVQMTQHQPHQEPQPTERDAEPQPEVTPELQSQPKSLSPPQETASSQEQDGASCVN
GMETDSKPQLNILEPACLTAEEPSCSPSPSLPSTPTCFQNEPLTGEKTPELSVSPSVDAD
TEQTGPKVNAETEPELEKTDTEET
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaggcgtttaacggcgagctgtactcactgaatgaatacaagccaccg
atctccaaagcaaagatgacccagattacaaaatcagcaattaaagctataaagttctac
aaacatgtcgtccaaagtgtggagaaattcattcaaaagtgcaagcctgaatacaaagtc
cccggtctgtatgtcgtcgactccattgtacggcagtctcgtcaccagtttggtcaagag
aaagatgttttcgctccacgttttagtaagaacatcattaacacgtttcaaaacctctac
cgctgcccagctgatgacaagagtaagattgtccgagtactaaatctatggcagaaaaac
aatgtcttcaagagtgacatcatccagcctctactggatatggcagcaggacacccgccc
cccagcgttacacccgtctctgccagcagtgctgttcctgtcaacagcactactcctgga
actccagcaactcctgccaccccagccaacatagtgcagagtctcccggactgggcgtct
cagatctccaacacagacacagtggctgcggtcgcccagatcttacagagtccccagggc
cagcagttacagcagctggttcagagcctccagatgcagcagcagaagcctcagccctct
ctgctgcaggcgctggatgcaggtttggtggtgcagcttcaggccctgactgcacagctc
actgcagccgcagcagccaacacgctcaacccgctggaacagagagtctcctcctttaac
aagaagctgttgggtcagtttgattttgggaacgagtcggaacacagcgaggattctaag
aaagatgctacatcatctcagttacctgtggtaccggagtccatcaataactcaatattt
catcagctggccgagcatcttcagcagcaaaacctcgagcagtttcagaagcagctaatg
gagcaccagcagcatcaacagaagtctatgaccatggagagccaggatgccctctttggt
tctgaaaattcagcccctcctggccagagcagcgccccaccacagctcccagaacaagaa
gcaaaaatggatgactccattgataaccagcagcaggacatggatattgatgagggacag
gatactgtagatgaggagctctttgaggctgaggagaagaaaaccagcagcacccgttca
aggacacgctcgagatctcgctccaggtcacctaagagaaggaggtcaaggtctcgttct
gggtcccgaaagcgcaaacacaggaagagatcacggtctcgctcaagggacagaaagagg
aagtcctcacgttcttattccagtgagcgacgagcacgggaaagagaaaaggaacggcag
aaaaaaggacttcctccgatccgctcaagggttctgagtgtttgcagcactactctatgg
gtcggccaagtggacaagaaagccacccaacaagatcttactaacctcttcgaagagttt
ggccagattgaatccatcaatatgattcctcccagaggctgtgcttacatctgtatggtt
catcgtcaggatgcataccgcgcccttcagaaactggggacaggctcttacaaaatcggt
tcaaaggtcatcaaaattgcctgggccctcaataaaggggtgaaacaggagtataagcag
ttctgggatgtggaccttggggtgacttatatcccatgggagaaggtcaaactggatgat
ctggatgactttgcagagggaggcatgattgaccaggagacagtcaacaatgaatgggaa
tcccagagaaatactgagaccaccaaagagactccgagccaggctgttacagctgaaacc
agtacagcaagcagcacgcccagtgaggcctttacccagcctgtcactatgatgcccatg
cagattccagtggcacagacggtccctgctgttggccttatgcctccatccttccctgtc
accatgaccatgcccccaccaggctttggtccccctccaccttttctaagggcagggttt
aatgcctcacagcctcctccaggtttcatggccacaccaggagtaggaccgtctgcagtt
ggaaccagtcttgcttcagctcagacctctctagtgcagccttcgttgccaaccactcaa
gagaacagcaaggattctccgtttggagccatgattcctcccaccagtactattcctggg
agttttatttcgtcagcaatgcccggggctggagtctttaaccctgtgggagcacagcat
cagcagagcagcacagacaaaatgccacagtcggcagaaacgatggagacagcttctgag
atgacactacagggaatgcagaatgcagtgcgcagtagaatgggtctgctgggtatgcac
ccttctgcatctctaacacatcctctctctggccagaggatggcagggctgcttcctctg
gaactgagacccaacctgctccagggacacgggggccgcttccccctgctcatgcagcca
ggccttgcacaccagaccaacaacatcctggatgcttcacttcaagcccaagcccgggtt
cgggttccattctctcaaatggagcagttcaaccgcgctgagagcactttctcaagggct
cctaacccttcgtctgctggagctgaaagtctggctaagactgataatgaaacaccaccc
aggtcagatggaggtgcccaacaagaaggagatcaggactatcgctttccaccgccagag
aagcagagcacggggttgttaaagacgcctcctttggagatgcgtactgaacctgtgcct
cccagaccacctttactagaacgacctccgagaacagtcatgcaagctgaaggtcgagaa
ggtagaagagagaatatgtccggaggcttcagggcagaaagtcgctggggaccacccagg
ggggactttgatgagcgagacatgagggggatgtctggtgggcctccaaagggtttccag
gaggatcgttccaaccctaactttcagaatcgttttgagggccgcagcggaggttcatca
ggacccgcttggaatcgcggaactgggccttcttttaatgccaacatgcaccaggactac
gatgatcgtcgcagaccttgggaccgagatgacagggacatggacttccgaggtgaaatg
aatggcaatcgccaaagccgtgagcgagaccgagagcgcgaaagagagagggacaggaat
cgggaccgtgaacgcggcagagagcgcaatcgtgagagagaccgagaacgggagcgagag
agggagaatgagaaggacaaagagcgctggacacccgtttcttcacaatctcagccccaa
ccgctgcttcccaagtctcagccgctgctccctctgccgaccccatcgatcgctctgcct
catgcacagaaacaagtgcaaatgacccaacaccagcctcatcaggaaccacagccaaca
gaacgagatgctgaaccccaaccagaggtaacaccagagctgcagtcacagcccaagtca
ctcagcccccctcaagagacggcaagtagtcaagagcaggacggagcgtcatgtgtcaat
ggaatggagactgattcaaaacctcagctaaacattttggaacctgcgtgcctgaccgct
gaagagccctcttgtagcccctctccatcccttccctccacacccacctgcttccagaat
gagcccttgacaggagagaagaccccagaattgtctgtttccccctctgtggatgcagac
actgaacagactgggccaaaggtgaacgctgagactgaacctgagctagagaaaacagac
actgaggaaacataa
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integrated database retrieval system
