Carassius auratus (goldfish): 113117450
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Entry
113117450 CDS
T07313
Name
(RefSeq) polyadenylate-binding protein 4-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113117450
09123 Folding, sorting and degradation
03018 RNA degradation
113117450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113117450
03041 Spliceosome [BR:
caua03041
]
113117450
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113117450
mRNA cycle factors
Stress granule specific factors
113117450
Spliceosome [BR:
caua03041
]
Complex C
Other components
Complex C specific factors
113117450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_occluded
RBD_RDR6
OB_RNB
POP1_C
DUF6262
Motif
Other DBs
NCBI-GeneID:
113117450
NCBI-ProteinID:
XP_026141917
Ensembl:
ENSCARG00000067336
UniProt:
A0A6P6R9R7
LinkDB
All DBs
Position
17:17587738..17597159
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AA seq
632 aa
AA seq
DB search
MNAATAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
QQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAEMGAKAKEFTNVYIKNFGEDMDDPRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYE
KHEDANKAVEEMNGMELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPAGGYFMPAVPQAQNRT
TYYAPNQLTQMRPNPRWQQGGRGQGGFQGMPNSLRQPGPRANIRHMAPSASTQGPRGIPT
GAQRVGPMGPRPGMGVTTPRAMPPYKYATTIRHTQPQVVQPITLQQAQPAVHVQGQEPLT
ASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHESLRSK
VEEAVAVLQAHQAKKDATQKVGVTAATVAATS
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcagcgacggcggggagttatccgatggcttctctctatgtgggcgacctgcac
cctgatattacggaggctatgctgtatgagaaattcagtccggccggcccggtgctgtcc
atccgcgtgtgtcgggatatgatcacgcggcgctcgctgggctatgcctacgtcaacttc
cagcagcccgcggacgcggaaagagctttggacacaatgaacttcgatgtggtcaaagga
aagccgatcagaatcatgtggtcacaaagagatccgtcacttaggaaatctggagttgga
aatgtcttcatcaaaaatctggacaaatccattgacaacaaggccctatacgacaccttc
tctgcttttgggaacatcctgtcctgtaaggtggtgtgtgacgagaacggatctaagggt
tacgcctttgtgcattttgaaactcaggacgcagccgatcgcgccattgagaagatgaat
ggcatgttgctgaacgaccgcaaggtgtttgtggggcgtttcaagtccaggaaggagaga
gaagcagagatgggtgccaaagccaaagaattcaccaacgtttacatcaagaacttcggc
gaggacatggatgatccgagactgaaggagctctttgataaatatggtaaaacactgagc
gtgaaggtcatgactgaccccacagggaaatctcgtggatttgggtttgtgagctatgag
aagcatgaggatgctaacaaggctgtggaagagatgaatggtatggagcttaatggtaag
acggtgtttgttggccgagcacagaaaaagatggagagacaagcagaactcaagaggaag
tttgaacagctcaaacaggaaagaatcagcagatatcagggtgtgaacttgtatatcaag
aatcttgatgacaccattgatgatgagaaacttcgtaaagagttctctcctttcggctcc
attaccagtgccaaggtgatgctggaggatggcaggtccaaaggttttggctttgtgtgt
ttctcctcacccgaggaggccacaaaggccgtgacagagatgaacggccgtattgtgggc
tccaaaccactgtatgtagccctggcccaacgcaaagaagaacgcaaagctcatctgacc
aatcaatacatgcagcgtatcgctggcatgagggccatgcctgccaacgctatcatcaac
cagttccagcctgccggtggttactttatgcccgctgtgccacaggcccagaacagaacg
acatactatgcaccaaaccagctcactcagatgcgtccgaaccctcgctggcagcagggt
ggcagaggtcagggtggtttccagggcatgcccaactccttgcgccagccagggccccgt
gccaacatacgccacatggcccccagtgcttccacccagggcccacgcgggatccccaca
ggtgcacagagagtgggaccaatgggtccccgcccgggcatgggggtgacgactccacgt
gccatgcccccatacaagtacgccaccaccatacgacacactcagcctcaggtcgtgcag
cccattactctgcaacaggctcagccagctgttcatgtgcagggtcaggagcctctcact
gcctccatgttagctgccgctcctcctcaggaacagaaacagatgcttggtgagcggctg
tttcctctcatccaggcaatgcaccccagtctagccgggaagatcacaggaatgctgcta
gagatagacaactctgagctgctgcacatgctggagtcccatgagtctctgcgctccaag
gtggaggaggctgtcgcagtgcttcaggctcatcaggccaagaaagatgccacacagaaa
gtgggagtcaccgctgcgactgtagccgcaacatcatga
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