KEGG   Carassius auratus (goldfish): 113118597
Entry
113118597         CDS       T07313                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9-like
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03020  RNA polymerase
caua03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    113118597
  09124 Replication and repair
   03420 Nucleotide excision repair
    113118597
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:caua03021]
    113118597
   03400 DNA repair and recombination proteins [BR:caua03400]
    113118597
Transcription machinery [BR:caua03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     113118597
DNA repair and recombination proteins [BR:caua03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      113118597
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Ogr_Delta Zn_ribbon_recom Zn_Ribbon_TF Zn_ribbon_GRF_2 Zn_ribbon_NrdR GpA_ATPase Lar_restr_allev SR1P HVO_0758 Zn_ribbon_Top1 DZR
Other DBs
NCBI-GeneID: 113118597
NCBI-ProteinID: XP_026143676
Ensembl: ENSCARG00000016656
UniProt: A0A6P6RE00
LinkDB
Position
18:complement(18653592..18655225)
AA seq 126 aa
MDLEGGSYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKIT
HEVDELTQIIADVAQDPTLPRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHC
GHRWTE
NT seq 381 nt   +upstreamnt  +downstreamnt
atggatctggaaggtggctcgtatgagcctgggtttgtgggcatccgcttctgtcaggag
tgtaataacatgttgtatcccaaagaggataaagaaaaccgcatcctgctctatgcttgc
agaaactgcgactatcaacaagaagccgacaacagctgcatctatgtgaataaaatcacc
catgaggtggatgaactcactcagattattgcagacgtggctcaagatccaacactgcct
cggacagaggaccacccttgcccaaagtgtggccacaaggaggcggtgttcttccagtct
cacagcatgaaggctgaggatgccatgaggctttactatgtgtgtactgccccacactgc
ggccacagatggacagaatga

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