Carassius auratus (goldfish): 113118691
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Entry
113118691 CDS
T07313
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113118691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113118691
03036 Chromosome and associated proteins [BR:
caua03036
]
113118691
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113118691
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113118691
mRNA degradation factors
5'-3' decay
Decapping complex
113118691
Chromosome and associated proteins [BR:
caua03036
]
Eukaryotic type
Gene silencing
piRNA pathway
113118691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
113118691
NCBI-ProteinID:
XP_026143846
Ensembl:
ENSCARG00000063226
UniProt:
A0A6P6REH2
LinkDB
All DBs
Position
18:22132163..22152457
Genome browser
AA seq
484 aa
AA seq
DB search
MSTARMENPVILGLSNQNGQMRGSVKPAGGPGGGGGVSQTTQPAQVKPSSTVNNGNSQPA
PTANTIIKPGDDWKKNLKLPPKDLRMRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKP
SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQALVIVPTRELALQ
VSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQ
VQMIVLDEADKLLSQDFVQMMEEILSYLAKQRQILLYSATFPLSVQKFMNSHLQKPYEIN
LMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGY
SCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYL
HRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSESGE
EVKL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaatggagaatccagtgattctaggactatcgaatcaaaatggccaa
atgcgaggctctgtgaagccagcaggtggtccaggaggaggtggaggggtgtcccaaaca
acacagccagcccaggtcaaaccctccagcacagtcaacaacggcaactcccagcctgca
cctacagccaacactatcatcaagcctggggatgactggaagaagaatctaaaacttcct
ccgaaggatttgcgcatgaggacttcagatgtgacggcgaccaagggaaatgagtttgag
gattactgcctgaaacgggaactgcttatgggcatctttgaaatgggctgggagaaaccg
tcacctatacaggaggagagcattcccattgcgttgtctgggagggacattctggccaga
gccaagaatggcacaggaaaaagtggcgcctacctcattcccttacttgaacgcattgac
ctgaagaaagacagcatacaagcgttggttattgtgcccactagagaactggctctacaa
gtgagccaaatatgcattcaggtcagcaaacacatgggcggggtcaaggtcatggcaact
acaggtggaaccaacctccgtgatgacatcatgagacttgacgaaacagtgcatgttgtc
attgccactccaggaagaattttagacctcatcaaaaagggagtggccaaagtcaatcaa
gtacagatgatcgtgttggatgaggcagataagctcctgtcacaggactttgtacagatg
atggaggagattctgagctatttggccaaacaaaggcaaattttgctgtactctgccacc
ttcccactgagtgtgcagaagtttatgaactcccatctgcagaagccctatgagataaac
ctgatggaggagctgaccctgaagggggttacccagtattacgcctatgtaactgaaagg
cagaaagttcattgccttaatactctgttctccaggctccagatcaatcagtctataatc
ttctgcaattcatcacagcgagtggaactcctggcaaagaagatctctcagcttggatac
tcctgtttctacattcacgccaagatgagacaggaacaccgaaaccgtgtgttccatgat
tttagaaatggcttatgtcgaaatctcgtctgcactgatctcttcacaagaggaattgat
atacaagctgtgaatgtggtgatcaactttgatttccccaaactgggggagacgtacctc
catcgcattggcagatctggtcggtttggacacttgggtctcgccattaacttgatcact
tatgatgaccgctttaacctgaaaggtattgaagaacagctgggtactgaaataaagccc
attcccagcagtattgataagagtctatatgtggcggagtaccacagtgagagtggagag
gaggttaaactgtga
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