Carassius auratus (goldfish): 113118735
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Entry
113118735 CDS
T07313
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03420
Nucleotide excision repair
caua04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113118735 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
113118735 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
caua04121
]
113118735 (ddb1)
03400 DNA repair and recombination proteins [BR:
caua03400
]
113118735 (ddb1)
Ubiquitin system [BR:
caua04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
113118735 (ddb1)
DNA repair and recombination proteins [BR:
caua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
113118735 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
113118735 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
113118735
NCBI-ProteinID:
XP_026143928
Ensembl:
ENSCARG00000021247
UniProt:
A0A6P6RFD9
LinkDB
All DBs
Position
18:24392146..24412104
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVQFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSESGRN
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFFCGNVAHQQLIQITSVSVRLVT
QDSKALVSEWKEPQGRNISVASCNSTQVVLAVGRVLYYLQILTGELKQISSTEMEHEVAC
LDITPLGESAGESSICAVGLWTDISARLLKLPCFSPLHKEMLGGEIIPRSILMTTFEGSH
YLLCALGDGALFYFGLDIQTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PKRICYQEVSQCFGVLSSRVEMQDTSGTTAAVRASASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLQNEYALSMVSCKLGRDPAVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFSGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKQMEGSFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFSHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSESWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQMDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgttgtgacggcgcagaagccgacggcggtgaacgcctgcgtcacg
ggtcacttcacttctgcggaggatctgaacctgctgatcgccaagaacacgcgtctggag
atctatgtggtcactgctgagggtctgaggccggtcaaagaggtcggcatgtacggcaag
atcgcggtcatggagctcttcagacccaagggtgagagcaaagatcttctgttcattctg
accgctaaatacaacgcctgtatcctggagtacaagcagaacggagacagcatcgacatc
atcacccgcgctcacggaaacgtgcaggatcggatcggccgtccgtctgagaccgggatc
atcgggatcgtggatccggagtgtcgtatgatcggcttgcggctgtacgatgggctgttt
aaggtcattcctctggaccgtgataaccgcgagctcaaagccttcaacattcgtctggag
gagctgcaggtcatagacgtccagttcctgtacggctgccaggcgcccaccgtctgcttc
atatatcaggatcctcagggtcggcacgtcaagacatacgaggtttctctcagagagaag
gagttcaacaaaggaccctggaagcaggagaacgtggaagctgaagcgtcgatggtcatc
ccagtcccagagccgtttggaggagctataatcatcggacaggagtccatcacttatcac
aacggagacaaatacttagccatcgctcctccaactatcaagcaaagcaccatcgtgtgt
cacaaccgcgtggatccgaacggctcgcggtacctgctgggagacatggagggacgactc
ttcatgctgctgttggagaaagaggagctgatggacggagctgtggtgctcaaagacctg
cgggtggagctgctgggagagacctccatcgccgagtgtctgacgtatctggacaacggt
gtggtgtttgtgggctccagacttggagattctcaactagttaagctgaatgtggacagt
aatgaccagggttcgtatgtggctgtaatggagaccttcactaacctggggccgatagtg
gacatgtgtgtggtggacctggagagacaaggacagggtcagctggtgacgtgctccgga
gcgtttaaggaaggctctctccggatcatccggaatggcatcgggatccatgagcacgcc
agcatcgatctgcccggcatcaaaggtctgtggcctctccgctccgagtcgggcagaaac
actgatgacatgctggttctgtcgtttgtgggtcagaccagggtgctgatgctgagtgga
gaggaggtggaggagacggagctgccggggtttgtggataatcagcagacgttcttctgt
gggaatgtagcgcatcagcagctcatacagatcacgtcggtgtctgtgaggctggtcact
caggacagcaaggctctggtgagcgagtggaaggagcctcagggcaggaacatcagcgtg
gcgtcctgcaacagcactcaggtggttctagctgtgggtcgagtgctgtattaccttcag
atcctcacaggagaactcaaacagatcagctctacagagatggagcatgaggtggcgtgt
ctggacatcactcctctgggtgagagcgcaggagaatccagcatctgtgctgtgggactc
tggaccgacatctcagcacgcctgctcaagttaccctgcttcagcccgctgcacaaagag
atgctgggcggagagatcatccctcgctccatcctcatgaccacatttgagggcagtcat
tacctgctgtgtgcgctgggagacggggcgcttttctatttcggactggacattcagaca
ggtgttttgagtgagcgtaagaaggtgactctgggcactcagcccacggttctgcgcacc
ttccgctcgctctccacctccaatgtgttcgcctgctccgaccggcccaccgtcatctac
tccagcaaccacaaactagtcttctctaacgtcaacctgaaggaggtcaactacatgtgc
ccgctcaactccgagggataccccgacagtctggctctggccaacaacagcacactgacc
atcggcaccatcgacgagatccagaagctccacatcagaaccgttcctctctacgagtcg
cccaagcggatctgctatcaggaggtttctcagtgtttcggagttttgtccagtagagta
gagatgcaggacaccagcgggacaacagcagccgtgcgggccagcgccagcacacaggcg
ctctccagcagtgtcagctccagtaagctgtttcccagcagcacttctcctcatgagacg
tcgttcggagaggaggtggaggtgcacagtctgctggtggtggatcagcacacgtttgag
gtgctgcacgcgcatcagttcctgcagaatgagtatgcactgagtatggtgtcctgtaag
ctgggcagagatcctgcggtctacttcatcgtcggcacggccatggtgtatccggaggag
gcggagcctaaacagggccgcatcatcgtctttcactacacagacggcaaactgcagacg
gtggcagagaaggaggttaaaggtgcggtttactccatggtggagtttagtggtaaactg
ctggccagcatcaacagcaccgtgcgtctgtacgagtggacggcagagaaggagctgagg
accgagtgcaatcactataataacatcatggccctgtatctgaagactaaaggagacttc
atcctggtgggagacctgatgcgctccgtgctgctgctggcctacaaacagatggagggc
agcttcgaggagattgctcgtgacttcaatcctaactggatgagtgctgttgaaatcctg
gatgatgacaacttcctcggagcggagaacgctttcaatctgttcgtctgccagaaggac
agcgcggcgacgacagacgaggagcgacagcacctgcaggaagtgggtctgttccacctg
ggagagttcgtcaatgtgttctcacacgggtctctggtgctgcagaatctgggcgagagc
tcgactcccacacagggctcggtgctgttcggcacggtcaacggcatgatcggtctggtg
acgtcactgtcagagagctggtacagtttactgctggacctacagaaccgactcaacaaa
gtcatcaagagcgtcggcaagatcgagcacagcttctggaggtcgttccacaccgagcgt
aagactgagcaggccacagggttcattgatggagatctgatcgagagcttcctggatctg
gggcgagcgaagatgcaggaggtggtcagcacgctgcagatggatgacggcagcgggatg
aagcgtgaggcgacggtggacgaggttattaaaatcgtggaagagctgacgcggatccac
taa
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integrated database retrieval system
