Carassius auratus (goldfish): 113119188
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Entry
113119188 CDS
T07313
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113119188
09123 Folding, sorting and degradation
03018 RNA degradation
113119188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113119188
03041 Spliceosome [BR:
caua03041
]
113119188
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113119188
mRNA cycle factors
Stress granule specific factors
113119188
Spliceosome [BR:
caua03041
]
Complex C
Other components
Complex C specific factors
113119188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_7
RBD_RDR6
RRM_occluded
RRM_3
YflT
HTH_58
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
113119188
NCBI-ProteinID:
XP_026144250
Ensembl:
ENSCARG00000005125
UniProt:
A0A6P6RGE0
LinkDB
All DBs
Position
19:4862315..4877317
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGSAMSIRVMTDENGKSRGFGFVSFER
HEDAQRAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPASQLTQLRPSPRWTTQGVRPQHFQNMPGTMRASAPRPQSFNTMRPASQVPRMMSTQ
RVAAQTMGPRPSGAAAAASAPPVRGVPQYKYTPSVRSPQQHINTQPQVTMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKTVTNSSGVPSV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcccagttaccccatggcctcgctgtatgtgggagacctgcaccag
gacgtgactgaagccatgctctacgagaagtttagcccggccggtgccatcctctccatc
cgggtgtgcagggacatgatcacgcgccgctcgctgggctatgcctacgtcaacttccag
cagcctgcagatgctgaacgcgctctagacactatgaactttgacgtgatcaagggtaga
cctgtgcgcatcatgtggtctcagcgcgacccctcgctgaggaagagcggcgttggaaac
atcttcatcaagaacctggataagtctattgataataaagcgctttatgacaccttttct
gcatttggcaacatcctgtcctgcaaggtggtttgtgacgagaatggctcaaagggctat
ggctttgtgcactttgagacccaggaggccgctgaaagagccattgagaaaatgaacggc
atgttgctgaatgacagaaaagtgtttgtagggcgcttcaaatctcgcaaggagagggag
gctgagctcggggcaagagccaaagaattcaccaatgtgtacatcaaaaactttggggaa
gacatggatgatgacaaactcaaggacatcttcagcaaatatggttctgccatgagcatc
cgtgtcatgactgatgaaaatggaaagtccagaggctttggattcgtgagttttgagagg
cacgaagacgcccaaagggctgtggatgagatgaacggcaaagaactgaacgggaagctc
atttatgtgggtcgtgctcagaagaaagtggagcggcaaactgagctcaagcgcaaattt
gaacagatgaagcaggaccgcatgactcgttaccagggtgtcaatctttacgtgaagaac
ttggatgatggtattgatgacgagcgtcttcgtaaagagttctcccccttcggtacaatc
accagtgccaaggtcatgatggacggcggtcgcagtaaaggcttcgggtttgtctgtttc
tcttcccctgaggaagccactaaagccgtgactgagatgaatggccgtattgtggccact
aagcccctgtatgtggctcttgctcagcgcaaagaggaacggcaggcccatctcaccaac
cagtacatgcagaggatggccagtgtccgcgcagtgccaaaccccgtgattaacccctac
cagcctgcacctccatcaggatacttcatggctgccattccacaggcccagaacagagct
gcgtattaccctgccagtcagctcacccagctcagacccagtccccgctggaccacacag
ggcgtccggcctcagcacttccagaacatgccgggcacaatgcgggcgtctgcccccaga
ccgcagtccttcaacaccatgcgtcctgcgtctcaggtgcctcgcatgatgtccacacag
cgcgttgctgctcagacgatgggtccacggcccagcggtgcagcggctgcagcttcagct
cctccagtgcgaggcgtcccgcagtacaaatacacccccagtgtccgcagcccccagcag
cacatcaacacacagcctcaggtgaccatgcagcagcctgctgtgcacgtgcaaggacag
gagccgctcacggcctccatgctcgccgctgccccgccacaggaacagaagcagatgctg
ggtgagcgtctcttcccacttatccagaacatgcatcccagcctggctggcaagatcacc
ggtatgctgctggaaatcgacaactcggagctcctccacatgctggagtctccagagtct
ctgcgctccaaggtcgatgaggcggtggccgtactccaggctcaccaggctaaagaagcc
gctcagaagaccgtgaccaactcttctggcgtgccaagcgtctaa
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integrated database retrieval system
