KEGG   Carassius auratus (goldfish): 113119317
Entry
113119317         CDS       T07313                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like isoform X1
  KO
K12857  Prp8 binding protein
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113119317
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:caua03041]
    113119317
Spliceosome [BR:caua03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    113119317
 Complex C
   U5 SnRNP specific factors
    113119317
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_SPT8 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N eIF2A Cytochrom_D1 Beta-prop_IFT140_2nd WD40_like Beta-prop_Nup120_160 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 113119317
NCBI-ProteinID: XP_026144453
Ensembl: ENSCARG00000029636
UniProt: A0A6P6RGZ0
LinkDB
Position
19:complement(7961035..7967221)
AA seq 347 aa
MIEPKKRVAEMAVVPAGVKRPRTELVSAAQSQQLSAMGPPRSSSLQAPIMLLSGHEGEVY
CCKFHPNGATLASSGYDRLILLWNVYGECENYATLKGHSGAVMELHYNTDGSLLFSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTF
QNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSVDGSYL
LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY
IWDTTTRRILYKLPGHAGSVNEVAFHPDEPIVLSGSSDKRLYIGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgaaccaaagaagcgtgtcgcagagatggcagtggttcccgcgggagtgaagagg
ccccggaccgaactggtgtctgcggcgcagtcccagcagctctctgcgatgggccccccg
cgcagctccagtctgcaggctcctataatgctgctatctggtcatgaaggtgaagtttac
tgctgcaaatttcaccccaatggagccacgttagcctcctctggatatgaccgtctcatc
ttgctgtggaatgtatatggagagtgtgagaactatgcaacacttaaaggccacagtgga
gctgtgatggagcttcattataacacggatggcagtctgctcttttcagccagtacggac
aagacggtgtgcgtgtgggacagtgagacaggggagcgcgtgaagcgtctgaaaggtcac
acttccttcgtgaactcctgtttcccggctcgccgtggaccacagctggcctgtacgggc
agtgatgatggaactgtgaagctgtgggacattaggaagaaggcctcggttcacacattc
cagaacacgtatcaggttcttagtgtgacattcaatgacaccagtgaccagatcatctca
ggaggcatcgacaatgacataaaggtatgggacctcagacagaacaagctgatttacagt
atgcagggtcatggagactctgtgacaggtctgagtctcagtgtagacgggtcttaccta
ctgtctaactcaatggataacagcgtgcgtgtctgggatatccgtccatttgccccaaag
gagaggtgtgtgaagatctttcagggaaatgtccataactttgagaagaatcttctcaga
tgctcttggtctcctgatgggagtaagattgcagctggctctgctgacaggtttgtgtat
atttgggacacgacgacccgtaggatcctttataagctcccaggtcatgctgggtctgta
aatgaggtcgctttccatccagatgaaccaattgttctctctggatccagtgataaacgc
ctctacatcggagagattcaataa

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