Carassius auratus (goldfish): 113120142
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Entry
113120142 CDS
T07313
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113120142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113120142
03036 Chromosome and associated proteins [BR:
caua03036
]
113120142
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113120142
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113120142
mRNA degradation factors
5'-3' decay
Decapping complex
113120142
Chromosome and associated proteins [BR:
caua03036
]
Eukaryotic type
Gene silencing
piRNA pathway
113120142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
113120142
NCBI-ProteinID:
XP_026145863
Ensembl:
ENSCARG00000030591
UniProt:
A0A6P6RJH7
LinkDB
All DBs
Position
19:complement(29003306..29009443)
Genome browser
AA seq
489 aa
AA seq
DB search
MTTKMENSGPGVMGLSTHNRQHLGQPKASSQLGPQTASAQPGKEPMVTQKPANASQEGPG
IRFGDDWKKSLQLPSKDNRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEE
SIPIALSGRDILARAKNGTGKSGAYLIPLLERIDIKKDHIQAIVIVPTRELALQVSQISI
QISKHLGGVNVMATTGGTNLRDDIMRLDEKVHVVVATPGRILDLMKKGIAKVDKVQMMVM
DEADKLLSQDFVVIIEDIIGFLSKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELT
LKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIH
AKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRS
GRFGHLGLAINLISAEDRFNLKTIEDQLITDIKPIPGSIDKSLYVAEFHSVDPDCEAEEP
QRGEGSEAH
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaaagatggagaacagtggcccgggtgtcatgggattgagcacacacaacagg
cagcatttaggacagcctaaagcttcctctcaattaggaccccaaactgcgagtgctcag
cctggaaaggagcccatggtgacccagaaaccagccaatgcatctcaggaaggacctggt
atcaggtttggtgatgactggaaaaaaagcctacagctcccttctaaggacaatagagtc
aaaacttctgatgtgaccgcaaccaaagggaatgagtttgaggactactgtctaaaaaga
gagttgctgatgggcatttttgagatgggctgggaaaagccatcccccattcaggaggag
agtattcctattgccctttctggacgcgatatactggctcgagccaaaaacgggaccgga
aagagtggtgcatacctgatcccccttctggagagaattgacataaaaaaggatcatatc
caagccattgtgatagttcccactcgtgaactggctctgcaggtcagtcagatcagtatt
cagatcagcaagcacctcggtggggtcaacgtcatggcaaccacaggtgggaccaaccta
cgagatgatatcatgcgcctggatgagaaggttcatgttgttgtagcaacacctggcaga
attttggacttgatgaaaaagggcatagccaaagtggataaagttcagatgatggttatg
gatgaagctgataagctgctctctcaggactttgtggttattattgaggacatcattggt
ttcctttcaaagaacagacagattctgctctattcagccacattccccatcagcgtacag
aagtttatggcaaagcatctgcagaagccctatgagattaatctgatggaggaactgacc
ctgaaaggcattactcagtactatgcttatgtcacagagagacagaaagtccactgcctt
aacacactcttctccaggctgcagataaatcagtccatcatcttttgtaactctactcag
cgagtggagcttctggccaagaagatcacgcagctgggctactcctgcttctacattcat
gcaaagatgatgcaggaatacagaaaccgtgttttccacgacttcagaaacgggctctgc
aggaaccttgtttgcacagatttattcactagaggcatcgatatccaggcggtaaatgtg
gtcatcaactttgactttcccaagaatgcagaaacatacctgcatcgcatcggacgctca
ggcaggtttggacatctgggtttggcaatcaatctcattagcgctgaggatcgctttaac
ctgaagaccattgaggaccagctgatcacggacataaagcccattcctggcagcattgat
aagagcctgtatgtggcagagtttcactccgtggaccctgactgtgaggcagaggagcct
cagcggggcgaagggtctgaagcacattag
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