KEGG   Carassius auratus (goldfish): 113120295
Entry
113120295         CDS       T07313                                 
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
  KO
K12589  exosome complex component RRP42
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    113120295 (exosc7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:caua03019]
    113120295 (exosc7)
Messenger RNA biogenesis [BR:caua03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     113120295 (exosc7)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     113120295 (exosc7)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C DDE_Tnp_4
Other DBs
NCBI-GeneID: 113120295
NCBI-ProteinID: XP_026145986
Ensembl: ENSCARG00000014352
UniProt: A0A6P6RKG5
LinkDB
Position
19:25637625..25641426
AA seq 291 aa
MAAVQVSEAEKVYIMHGVRDDLRLDGRGCEDYRHMEIETDVVSNTDGSAKISLGHTDVLV
GVKAEIGKPRAMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNTLYKVFNNRHSVD
LRSLCICPGENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVHISEDEEGVKEI
ELSDDPYDCMRLNVENVPCIVTLCKVGHRHVVDATLQEKACSVASLLISVTHRGTVTCVR
KMGGGSLDPESIFEMTEAGKRVGKALHAPLMELLQKEESLGKKRQKVGFLG
NT seq 876 nt   +upstreamnt  +downstreamnt
atggcagcagttcaagtaagcgaagcggagaaggtttatattatgcatggagtccgtgat
gacctgagactggacgggcgaggatgtgaagactacagacacatggagatcgagacggat
gtggtgtcaaacactgatggttctgctaaaatcagtcttggtcacacagatgttcttgta
ggagttaaggcagagattgggaaacccagagccatggtaccagatgaaggctatctggag
ttctttgtggactgctcagcgaacgccactccagagtttgaggggcgtggaggggaggag
ctgggggtggagcttagtaacacgctctataaagtgttcaacaacagacacagcgtggac
ctgcgttccctctgcatctgtccgggagagaactgctgggtgctgtacgtggatgtgttg
ctgctgcagtgtgatggaaacctgtttgatgccatatccattgcgataaaagctgctctg
tttaatacacgaattcccaaagtgcacatatctgaggatgaggagggagtgaaggagatc
gagctgtcagacgacccttacgactgcatgcggctcaatgtggaaaatgtgccatgtatc
gtaaccctctgcaaggttggtcacagacatgtggtggacgccacgctgcaggaaaaggcc
tgctctgtggccagtctcctgatttcagtcacacaccgagggacggtcacgtgcgtcagg
aaaatgggaggaggaagtctggacccagaaagtatctttgagatgacagaggctgggaag
cgtgtgggcaaggctcttcatgcgcctctcatggagctgctgcagaaagaagaaagtctt
ggcaagaaacggcagaaagtgggattcctcggatag

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