Carassius auratus (goldfish): 113120621
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Entry
113120621 CDS
T07313
Name
(RefSeq) 5'-3' exoribonuclease 2-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03008
Ribosome biogenesis in eukaryotes
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
113120621
09123 Folding, sorting and degradation
03018 RNA degradation
113120621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caua03021
]
113120621
03019 Messenger RNA biogenesis [BR:
caua03019
]
113120621
03009 Ribosome biogenesis [BR:
caua03009
]
113120621
03016 Transfer RNA biogenesis [BR:
caua03016
]
113120621
Transcription machinery [BR:
caua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113120621
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
113120621
Ribosome biogenesis [BR:
caua03009
]
Eukaryotic type
Pre-60S particles
RNases
113120621
Transfer RNA biogenesis [BR:
caua03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
113120621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
113120621
NCBI-ProteinID:
XP_026146337
Ensembl:
ENSCARG00000052557
UniProt:
A0A6P6RLM7
LinkDB
All DBs
Position
20:4573597..4599083
Genome browser
AA seq
958 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCLEEKAKEYNGITIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKNKMREEVIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLTNDPGWHNITVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCSQMGHEIKDCQGLAREKQGEHDEFADTVPVSEQE
FIFIRLSVLREYLEKELTMASLPFPFNFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYLTENGFVNLERVELIMQAVGVAEDNIFKKRKDDDESFKRRMKE
KKKRMKADKGPSFVPGGQFSPQALGGRDRPMAVQNARQAAYEMRMQGNQRNQDAAQSLRA
MMRNGKSPAGASNEMDNRGVKRKAEDSDSEPEPEDNVRLWEEGWKQRYYKTKFDVDVTDD
EFRKKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFSDFEKGTKPF
KPLEQLMGVFPAASGNFLPQTWRALMTNPESSIIDFYPDDFAIDLNGKKYAWQGVALLPF
VDERRLRAALADVYPDLSPEEVRRNSLGSDVVFVGKSHPLCDFIRELYLAESHEETEIPA
ELCHGIQGILNLDEDPILPDKPVESPIPTLRDISSNSAIGIKFKDPQYDDCFVFKAVILP
GAKIPDKVLKPGDWEQGNRGPWRPQLGFNPNRQQAHLDQSGFRKLNHYVDRNQGRGQFGA
SPSYGAQQRGGHYSNAPPPRNYHQGNYRPPQRDHYPQNQYSRPAPMNDAAPYPRFQHGSH
GWDRSMQSQSTAYQQNQQRGRGGWRPPQNQQDSHRGGQQQGFGKGYGLPPPSRRNNWN
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcgtttttccgctggttgagtcggaagtatccgtcaataatagtacac
tgtcttgaggagaaggccaaggagtacaatggcattacaatcccagttgataccagcaaa
cccaatccaaatgaagtggagtttgacaacctgtatctagacatgaatggaattattcac
ccgtgcacacatccagaggacaagccagcacctaaaaatgaagatgaaatgatggttgcc
attttcgaatatattgaccgtctctttaacatcgttcgcccgagacgggttctgtacatg
gcaattgatggtgtggctcctcgtgccaaaatgaaccagcagcgctcaagacgcttccgg
gcatctaaagaaggagtggagcttgtagaagagaaaaataaaatgagggaagaagttatt
cagagaggtggttacctgccacccgaggaaataaaagagcgctttgacagtaactgtatc
acccctgggactgaattcatggataatttggccaaatgtttgcgatattacgtcgcagac
agactaaccaatgaccctggatggcacaatatcacagttttcttgtcagatgccagtgtt
cccggagaaggagagcataaaattatggatttcatcaggagacagagagctcagccaaat
catgacccaaacacacatcactgtctatgtggagctgatgctgatttgatcatgttgggt
ttggcgacacatgaacccaactttaccattataagagaagagtttaaacccaacaaaccc
agaccctgcgccctgtgtagtcagatgggccacgagatcaaagactgtcaggggctggcc
cgagaaaaacagggcgagcatgatgaatttgcagacacagttccggtatcagaacaggag
ttcatattcatccgactgtctgtgttacgagagtatctggagaaggagttaacgatggcc
agcctgcccttcccattcaacttcgagcggagtgtggacgactgggtgttcatgtgtttc
tttgtgggaaacgacttcttgccccacttaccatctctcgagatcagagagggtgccatc
gatcgtctggtgggcatctacaaagatgttgtgcataagaccgggggctacttaacagaa
aacggctttgtcaatctcgagcgtgtcgagcttattatgcaagccgtaggggtggcagag
gacaacatcttcaaaaagcgcaaagacgacgacgagagttttaaacggaggatgaaggaa
aagaaaaaacgaatgaaagcggacaagggtccatcatttgtccctggaggccagttttcc
cctcaggctctgggcggcagagacagacccatggcagtgcagaacgccagacaagctgca
tatgaaatgaggatgcagggaaatcagcgcaatcaggatgcagctcagtccttgagagcc
atgatgagaaatgggaagagtcctgccggagccagtaatgaaatggataatcgtggtgtg
aaacgtaaagctgaggacagtgacagcgaaccagaaccagaagataatgtcaggttatgg
gaggagggctggaaacagcgttactacaaaaccaaatttgacgtggatgtgacggatgat
gagtttcggaagaaagtggtgaagtcgtacgtggagggcctgtgctgggtgctcaggtat
tactatcagggctgcgcgtcctggaagtggtattttccctttcattatgctccgtttgcc
tccgacttcaaagacatcaagggcatgttcagcgatttcgagaaagggaccaaaccgttc
aaacctctggagcagctcatgggtgtatttcctgctgccagtggaaacttcctaccacaa
acctggagagctctgatgacaaacccagaatcttcaatcattgatttctatcctgatgac
tttgccattgatttgaatgggaagaagtacgcctggcagggtgttgctttattgccgttt
gtcgacgagcggagattacgagcagcgctagcagacgtctaccctgatttgtccccagag
gaggtgagaaggaacagtctaggaagtgatgtcgtgtttgtggggaagtcccaccccctt
tgtgacttcatccgggaactctaccttgcagaatctcatgaggaaactgagatccctgca
gaactttgccatggaatccaaggtatattaaatctagatgaagaccctattctaccagat
aaaccagtggagtcgcccatcccaacactgagagacatcagcagcaacagtgctattgga
atcaaattcaaggatccgcagtatgatgattgttttgtgttcaaggctgttatcctacca
ggggcaaagatccctgacaaggtccttaaaccgggtgattgggaacagggtaaccgcggc
ccatggagacctcaactgggatttaacccaaaccgccaacaagcccatctggaccaatca
ggtttcagaaagctgaatcattatgtggaccgaaatcaagggcggggtcagtttggagcc
agcccatcttatggggctcagcaaaggggaggtcattacagcaatgccccgcccccgaga
aactatcaccaaggaaactaccgtccaccccaaagagaccattaccctcaaaaccagtat
tcccgaccagctccaatgaatgacgctgcaccgtatcccaggttccagcatggatctcac
ggttgggaccggtccatgcagtcccagagcactgcgtaccaacagaaccagcagcgagga
cgaggaggatggagaccccctcaaaaccagcaggacagccacagaggaggacaacagcag
gggtttggaaagggttatgggttgcctccgccgtcaagacgcaacaactggaactga
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