Caulobacter sp. NIBR1757: AMEJIAPC_01657
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Entry
AMEJIAPC_01657 CDS
T10944
Symbol
rnj
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
caub Caulobacter sp. NIBR1757
Pathway
caub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMEJIAPC_01657 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caub03019
]
AMEJIAPC_01657 (rnj)
Messenger RNA biogenesis [BR:
caub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AMEJIAPC_01657 (rnj)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
DUF2680
A1_Propeptide
Motif
Other DBs
NCBI-ProteinID:
WGM38752
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Position
1721783..1723474
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AA seq
563 aa
AA seq
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MTDMTKPSPSDELIFLPLGGSNEIGMNFNLYGYGPEEARKWIVVDLGITFGDQTTPGVEV
ILPDPTFIEAYADDILGIVLTHAHEDHIGAVAWLWPRLKAPVYATPFTAFLLREKLREKG
LLDEVHITEVALGGSIELGPFELELITLTHSIPEPNGLAIRTPLGTILHTGDWKIDPDPL
LGAVTDAAAIRRLGDEGVLAMVCDSTNVFVDGVAGSEGEVRVAMTKLIGSLKGKIAVGCF
ASNVARMDTVIRAAEAAGRRVCLVGRSMHRMAAAAKSVGLMKGTAEFVSEKEAGYFPEST
ILYLCTGSQGEARAALSRIASGTHPHITLGKGDHAIFSSRVIPGNEVSIRALQNGLADRG
VRLYTERDHPGIHVSGHPCRDELKQMYQWARPQIAVPTHGERRHLLEHAALAKDLQVPMT
VTPRNGDMVRLAPGHPSIIDEVPAGRLYVDAGVLTPENGDALKQRRHAAFNGALTVSVVL
DAKGKLVSGPQVRALGLPGDEEYPLDDALDDLADEAEQAIRKIPGEDRAFDEIVEQAICR
VVKKGAYRIWERKPMVEAVVLRI
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgatatgactaagccttctccgagcgacgaactcatcttcctgccgctggggggc
tccaacgaaatcggcatgaatttcaacctctacggctatgggccggaagaggcccgcaag
tggatcgtcgtcgacctcggcatcaccttcggcgaccagacgacgcccggcgtcgaggtc
atcctgcccgatccgaccttcatcgaggcctatgccgacgatatcctcggcatcgtcctg
acccacgcccatgaggaccatatcggcgccgtcgcctggctctggccgcgcctcaaggcg
ccggtctatgcgacgccgttcaccgccttcctgctgcgcgagaagctgcgcgagaagggt
ctcctcgacgaggtccacatcaccgaggtggcgctgggcggctccatcgagcttggaccg
ttcgagctcgaactgatcaccctgacccactcgatcccggagccgaacggcctggccatc
cgcacgccgctgggcaccatcctgcacaccggcgactggaagatcgatcccgacccgctg
ctcggcgccgtcaccgacgccgccgccatccgccgcctcggcgacgaaggcgtgctggcc
atggtctgcgacagcaccaacgtcttcgtggacggcgtcgccggatcggaaggcgaggtc
cgcgtcgccatgaccaagctgatcggctcgctgaagggcaagatcgccgtcggctgcttc
gcctccaatgtcgcccgcatggacaccgtcatccgcgccgccgaggccgccggccgccgt
gtctgcctggtcggccgctcgatgcaccgcatggccgccgccgccaagtcggtgggcctg
atgaagggcacggccgagttcgtcagcgaaaaggaagccggctacttccccgagagcacc
atcctctacctgtgcaccggcagccagggcgaggcccgcgccgccctctcgcgcatcgcc
tccggcacccatccgcacatcacacttggcaagggcgaccacgccatcttctccagccgc
gtcatccccggcaacgaggtctcgatccgcgctctgcagaacggcctcgccgaccgcggc
gtgcgcctctacaccgagcgcgaccaccccggcatccacgtcagcggccacccctgccgc
gacgagctcaagcagatgtaccagtgggcccggccgcagatcgccgtccccacccacggt
gagcgccgccacctgctcgaacacgccgccctggccaaggacctgcaggtgccgatgacc
gtcacgccgcgcaacggcgacatggtccgcctggcccccggccacccctcgatcatcgat
gaagtccccgccggccgcctgtacgtcgatgccggggtcctgacgcccgagaacggcgac
gccctcaagcagcgccgccacgccgccttcaacggcgccctgaccgtgtcggtcgtgctc
gacgccaagggcaagctggtcagcggcccgcaggtccgggcgctgggcctgcccggcgac
gaggaatatcccctcgacgacgccctggacgatctggccgacgaggccgaacaggcgatc
cgcaagatccccggcgaggaccgcgccttcgacgagatcgtcgagcaggccatctgccgc
gtggtcaagaagggcgcctaccgcatctgggaacgcaagccgatggtcgaggccgtggtg
ctgcgcatctga
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