Caulobacter sp. NIBR1757: AMEJIAPC_01772
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Entry
AMEJIAPC_01772 CDS
T10944
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
caub Caulobacter sp. NIBR1757
Pathway
caub03410
Base excision repair
caub03430
Mismatch repair
caub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AMEJIAPC_01772 (recJ)
03430 Mismatch repair
AMEJIAPC_01772 (recJ)
03440 Homologous recombination
AMEJIAPC_01772 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caub03400
]
AMEJIAPC_01772 (recJ)
DNA repair and recombination proteins [BR:
caub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AMEJIAPC_01772 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AMEJIAPC_01772 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMEJIAPC_01772 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Peripla_BP_6
DUF6724
DUF2380
Nitroreductase
Motif
Other DBs
NCBI-ProteinID:
WGM38865
LinkDB
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Position
1822468..1824273
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AA seq
601 aa
AA seq
DB search
MADGAGPLDFLGVRKSLTGRVWRRRAADEGITRELQLRHGLSEPLARALASRGIDADGGG
DFLNPTLKSLFPDPSSFADMDRAAGILVDAAVSGRAVTVFADYDVDGASSAAQLVRWFRA
MGRDLPVYVPDRILEGYGPSPAAFRKIKDSGADLVITVDCGAAAHDALHEAARIGLDVVV
IDHHLMRGEPPPAAALVNPNRPDDTSGQGHLAAAGVVFVLLAALNREARRRGLFEDRPAP
NVMDWLDLAAMGAFCDVTSLTGFNRALAAQGLKVMSGWRNIGLKALLDVAKSQGPATAFH
AGFILGPRINAGGRIGRADLGARLLSTEDPEEAAALAQELDALNASRKEVEKTVIDEAVA
SIEKQSNFDPDAPVIVAAGDGWHPGVVGIAAGRLRERYRKPVIVIGIDRHADIGKGSGRS
QPGVNLGRAVQSAFDEGLLLAGGGHAMAAGLTVRPAAIPELRAYLCEQLAGEMIDAAAQD
AVEIDALIAPGGATRALWTDFQRLAPYGPGNPEPLFAIPDARIERPIAMRGGHVRVTLVD
SSGQRLKAVAWRAGETEMGQRLLAGGGGLHLAGKLKPDDWQGREDVELEIEDAADPRMAV
G
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggggccggcccgctcgatttcctcggcgtccgcaagtcgctgaccggccgc
gtctggcgccgccgcgccgccgatgaggggatcacccgcgagctgcagctgcgccacggc
ctcagcgagcccctggcccgcgccctggcctcgcgcggcatcgacgcggacgggggaggg
gacttcctcaatccgacgctcaagtcgctgttccccgacccctcgtccttcgccgacatg
gaccgcgccgccgggattctcgtcgacgccgccgtcagcggccgggccgtcaccgtcttc
gccgactacgatgtcgacggagcctccagcgccgcccagctggtccgctggttccgggcc
atgggccgcgacctgccggtctatgtccccgaccgcatcctcgagggctacggccccagc
cccgccgccttccgcaagatcaaggacagcggcgccgacctggtcatcaccgtcgactgc
ggcgccgccgcccacgacgccctgcacgaggccgcccgtatcggcctcgacgtcgtggtc
atcgaccaccacctgatgcgcggcgagccgccgcccgccgccgccctggtcaatccgaat
cgtcccgacgacacctccggccagggccatctcgccgccgccggcgtcgtcttcgtcctg
ctcgccgccctcaaccgcgaggcccgcaggcgcggcctgttcgaggaccgccccgccccc
aatgtgatggactggctggatctcgccgccatgggcgccttctgcgacgtcacctccctg
accggcttcaaccgcgccctggcggcccagggcctgaaggtcatgtccggctggcgcaac
atcggcctgaaggccctgctcgacgtcgccaagagccaggggcccgccacggccttccac
gccggcttcatcctgggcccccgcatcaacgccggcggccgaatcggtcgtgcagacctc
ggggcccgcctgctcagcaccgaggacccggaagaggccgccgccctggcccaggaactc
gacgccctcaacgcctcccgaaaggaggtcgagaagaccgtcatcgacgaggccgtcgcc
tcgatcgagaagcagagcaacttcgacccggacgccccggtcatcgtcgccgccggcgac
ggctggcacccgggggtggtcggcatcgccgccggccgcctgcgcgagcgctatcgcaag
ccggtgatcgtcatcggcatcgaccgccacgccgacatcggcaagggctcgggccgttcg
cagcccggcgtcaaccttggccgcgccgtgcagtccgccttcgacgagggcctgctgctg
gcgggcggcggccatgccatggcggccggcctaaccgttcgtcccgccgcgattcccgag
ctgcgcgcctacctttgcgaacagctggcgggcgagatgatcgacgccgccgcccaggac
gccgtcgagatcgacgccctgatcgcccccggcggcgccacccgcgctctgtggaccgac
ttccagcgcctcgccccctacggccccggcaatcccgagccgctgttcgccattcccgac
gcccgaatcgagcggccgatcgccatgcgcggcggccatgtgcgggtcaccctggtcgat
tcgtccggccagcggctgaaggccgtcgcctggcgggccggcgagaccgaaatgggccag
cggctgctggccggcggcggcgggctgcacctggccggcaagctgaaacccgacgattgg
cagggccgcgaggacgtcgaactggagatcgaggacgccgccgacccgcgaatggcggtc
ggctga
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