Caulobacter sp. NIBR1757: AMEJIAPC_01803
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Entry
AMEJIAPC_01803 CDS
T10944
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
caub Caulobacter sp. NIBR1757
Pathway
caub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMEJIAPC_01803 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caub03400
]
AMEJIAPC_01803 (mfd)
Enzymes [BR:
caub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMEJIAPC_01803 (mfd)
DNA repair and recombination proteins [BR:
caub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AMEJIAPC_01803 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
Cas3-like_C_2
SecA_DEAD
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WGM38893
LinkDB
All DBs
Position
1850361..1853828
Genome browser
AA seq
1155 aa
AA seq
DB search
MARDGDLKTIARAEGRLELTSAPEGFDALVMADLLRARGGPALFVARDGTRAEAFIGAMA
FFAPEIEVVHFPSWDCLPYDRVGPAASVAAQRMATLSRLAAGVDAKKPLLLVAAMAGAMQ
RVPPRASVIEASYSTRPGATVKIEDLERYFAVNGYHRASTVSERGEFAIRGGVIDVFPPA
GEEPVRLDLFGDTLESIRAFDPETQRSTKQLHDIRLLPVSEALLDKDAVARFRKGYVGEF
GAPGQDALYEAVREGGRRAGMEHWLPLFYPRLETLFDYLPDEALIAFDHQALEAREERLA
VINDAYEARADAQRKDSYRPLKPDALYLTAQEFDGLMSLRPTRWFTPFQRDGAAVIDMGA
RQGRTFAAERQQDSVNLFEATAAHAKALSEAGKRVLFASWSDGSSERLGSMLADHGMKKL
PVAKYWQAAKANDPKVPQRVVLPLEHGFETDNLAVISETDILGDRLARPRKKRRAANFLA
EASALTPGDLVVHIDHGIGRYEGLKTLEVQQAPHDCLELQYGGEAKLYLPVENIDLLTRY
GAEGDGVQLDKLGGAAWQSRKSKAKERLRVMAEGLIAIAAARATKSVEETDPPSGLFDEF
CARFPYEETDDQLNAIADVLTDLGSGKPMDRLICGDVGFGKTEVALRAAFVMAMSGKQVA
VVCPTTLLARQHFKTFTERFQGWPVKIRRLSRLAPAAEAAETREGLANGEFEIVVGTHAV
LSKLVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREM
SIIATPPVDRLAVRTYVMPWDEVSLREALLREKYRGGQSYFVTPRIKDLPDLEKFLRVSV
PEVKFVVGHGQMAPTQLEEVMTAFYDGQYDVLLSTTIVESGLDIPSANTMIIHRADMFGL
SQLYQLRGRVGRSKARAYAYMTTPVEKTLTLSAEKRLQVLQSLDSLGAGFQLASHDLDIR
GGGNLLGDEQSGHIREIGVELYQQMLEEAVAALKERAGEDSLSDRGWSPAINTGAAVLIP
EEYVPDLNVRLSLYRRLSEAEKSADREALAAELIDRFGPLPPETDSLLKVVAIKGLCREA
NVSKIDVGPKGAVIQFRNDVFENPGALVGHIAKNGAVWRLRPDQKIVVQGEWATPAARLD
AAEKVLSVLARLARA
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgtgatggcgacctgaagaccatcgccagggccgagggccggctggagctgacg
tcggcgccggagggcttcgacgccctggtgatggccgatctgctgcgggcccggggcggg
ccggcgctgttcgtggcccgggacggcacgcgggccgaggccttcatcggggccatggcc
ttcttcgcgccggagatcgaggtcgtccacttccccagctgggactgcctgccctacgac
cgggtcgggccggctgcgtcggtcgccgcccagcgcatggccaccctctcgcggctggcg
gccggggtggatgccaaaaagccgctgctgctggtcgcggccatggccggggccatgcag
cgggttccgccgcgcgcctcggtgatcgaggccagctattcgacccggcccggcgcgacg
gtgaagatcgaggacctcgagcgctatttcgcggtcaacggctaccatcgggcttccact
gtctctgagcgcggcgagttcgcgatccggggcggggtcatcgacgtcttcccgccggcc
ggcgaggagccggtgcggctcgacctgttcggcgacacgctggaatcgatccgcgccttc
gatccggagacgcaacggtcgacgaagcagctgcacgacatccgcctgctgccggtcagc
gaggccctgctcgacaaggacgcggtggcccgcttccgcaagggctatgtcggcgagttc
ggcgcgccggggcaggacgccctctatgaggcggtccgcgagggtgggcgccgggccggg
atggagcactggctgccgctgttctacccgcggctggaaacgctgttcgactacctgccg
gacgaggcgctgatcgccttcgaccaccaggcgctggaggcgcgcgaggagcggctggcc
gtcatcaacgacgcctacgaggcccgcgccgacgcccagcgcaaggacagctatcggccg
ctgaagccggacgcgctgtacctgacggcccaggaattcgacgggctgatgagcctgcgg
cccacccgctggttcacgccgttccagcgcgacggcgcggcggtcatcgacatgggcgcg
cggcagggacggaccttcgccgccgagcggcagcaggacagcgtcaacctgttcgaggcc
accgccgcccacgccaaggccctgtcggaggccggcaagcgggtgctgttcgccagctgg
tcggacggcagttccgaacgcctcggcagcatgctggccgatcacggcatgaagaagctg
ccggtcgccaaatactggcaggcggccaaggccaacgatcccaaggtcccgcagcgggtg
gtgctgccgctggagcatgggttcgagaccgacaacctggcggtcatcagcgagaccgac
atcctcggtgaccgcctggcccggccgcgcaagaagcgccgcgccgccaacttcctggcc
gaggccagcgccctgacgcccggcgatctggtcgtccacatcgaccacggcatcggccgc
tacgaaggcctcaagacgctggaggtgcagcaggcgccgcacgactgcctggagctgcag
tacggcggcgaggccaagctctacctgccggtcgagaacatcgacctgctcacccgctac
ggcgccgagggcgacggggtgcagctggacaagctgggcggggccgcctggcagtcgcgc
aagtcgaaggccaaggagcggctgcgggtcatggccgagggcctgatcgccatcgccgcc
gcgcgcgccaccaagtcggtcgaggagaccgatccgccgtccggcctgttcgacgagttc
tgcgcccgcttcccctacgaggagacggacgaccagctcaatgccatcgccgatgtgctg
accgatctgggctccggcaagccaatggaccggctgatctgcggcgacgtcggcttcggc
aagaccgaggtggcgctgcgcgcggccttcgtcatggccatgagcggcaagcaggtggcg
gtggtctgcccgaccaccctgctggcccgccagcacttcaagaccttcaccgagcgcttc
cagggctggccggtcaagatccgccggctgtcgcgcctggcgcccgccgccgaggccgcc
gagacccgcgaggggctggccaacggcgagttcgagatcgtcgtcggcacccatgcggtg
ctgagcaagctggtcagcttcaaggacctggggctggtcatcgtcgacgaggagcagcac
ttcggggtcaagcacaaggagaagctcaaggagcttcgcgccgacgtgcacatgctgacc
ctgaccgcgacgccgatcccgcgcaccctgcagatggcgctgagcggcatccgcgagatg
tcgattatcgccacgccgccggtcgataggctggcggtgcggacctacgtcatgccgtgg
gacgaggtgagcctgcgcgaggccctgctgcgcgagaagtatcgcggcggccagagctat
ttcgtcaccccgcgcatcaaggacctgccggatctggagaagttcctgcgcgtctcggtg
cccgaggtgaagttcgtggtcggccatggccagatggccccgacccagctcgaggaggtg
atgaccgccttctacgacgggcagtacgacgtgctgctgtcgacgacgatcgtcgagagc
gggctggatatcccttcggccaacacgatgatcatccaccgggccgacatgttcggcctg
agccagctgtaccagctgcggggacgggtcgggcggtcgaaggcgcgggcctacgcctat
atgacgacgccggtcgagaagaccctgaccctgtcggccgagaagcggctgcaggtgctg
cagagcctcgacagcctgggggcgggcttccagctggccagccacgacctcgacattcgc
ggcggcggcaacctgctgggcgacgagcagagcggccatatccgcgagatcggggtcgag
ctgtaccagcagatgctggaggaggcggtggcggcgctgaaggagcgggcgggcgaggat
tcgctcagtgaccgtggctggtcgccggccatcaacaccggcgccgccgtgctgatcccg
gaagagtatgtgccggacctcaacgtccgcctgtcgctgtaccgtcgcctgtcggaggcc
gagaagtcggccgaccgcgaggcgcttgccgccgaactgatcgaccgcttcgggcccttg
ccgccggagaccgacagcctgctgaaggtcgtcgcgatcaaggggctgtgccgcgaggcg
aatgtgtcgaagatcgatgtcgggccgaagggcgcggtgatccagttccggaacgacgtg
ttcgagaaccccggggcgctggtggggcatatcgccaagaacggcgccgtctggcggctg
cgtccggaccagaagatcgtcgtgcagggcgaatgggcgacgccggcggcgcggctggat
gcggcggagaaggtgttgagcgtgttggcgaggctggcgagggcctaa
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