Caulobacter sp. NIBR1757: AMEJIAPC_02673
Help
Entry
AMEJIAPC_02673 CDS
T10944
Symbol
ligD
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
caub Caulobacter sp. NIBR1757
Pathway
caub03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
caub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMEJIAPC_02673 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caub03400
]
AMEJIAPC_02673 (ligD)
Enzymes [BR:
caub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AMEJIAPC_02673 (ligD)
DNA repair and recombination proteins [BR:
caub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMEJIAPC_02673 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WGM39746
LinkDB
All DBs
Position
2721180..2723849
Genome browser
AA seq
889 aa
AA seq
DB search
MATRDLKTYDSKRDFGVTAEPSSQAAVKPSKALRFVIQKHAATRLHYDLRLEWEGVFLSW
AVTRGPSLDPADKRLAVEVEDHPLAYGDFEGTIPKGQYGGGSVMVWDRGYWAPEPGFDVA
KGLKKGELKVVFAGERVKGGYVLVRLRGDKFGGKRTNWLLIKHRDDYVKEGDGEGILERN
ATSIASGRSMEDIAAGKGKRPTAFMTKTAPKADAVWRSSDPEASGEAAAKQTAAPKAAPR
QTSRARKPKALKSLPDFIEPQLCKLVDRPPVGARFGHEIKFDGYRMQLRVEGGKATLRTR
KGLDWTHKFAAIARDAAALPDSIIDGEICALDDNGSPSFAGLQAALSDGMTDDLIFFAFD
LMAEGTEDLRPLPLSDRKARLETLIGEGTPRLRYVEHFTQAGDAVLSSACRMDLEGIISK
DLGAPYESGRSTTWTKSKCRAGHEVVIGGWTQTGSAFRSLIAGVFKDGKLVHVGRIGTGF
GKDKVATLLPKLKAIEIDKSPFSDKEPKGRSGTKAGDSHWVKPQLVAEIEYAGLTGDGNI
RQAAFKGLREDKPAKEVEAEVAPASTELAEPNPAVVKSKTVTVRAANSAEVLGVRLSSVD
KPLWPDGGDGSPVTKLELAQYYEAVGAWLLPHIKGRPCSIIRTPEGVDGEKFFQRHLMKG
ASNLLTETFVSGDRKGYLQIDRVEALIAVAQTSATELHPWNCQPFAPDVPGRLVFDLDPA
PGVTFDDAIEAAREVRDRLEDLGLVSFCKTTGGKGLHVVTPLTKSKIDWPTAKAFAREVC
ARMAADAPDRYLITMSKAQREGRIFLDYLRNDRMSTAVAPLSPRARPGATVSMPLTWTQV
KKGLDPAKYTIRTAPKIVKGMSAWEDYGDSERPIAAAIKRLERGAKAAA
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggccacccgagacctcaaaacctacgacagcaagcgcgacttcggcgtcaccgccgag
ccgagcagccaggcggccgtcaagccatccaaggccctgcggttcgtcatccagaagcac
gccgccacccggctgcactatgacctgcggctggagtgggagggcgtcttcctgtcctgg
gccgtgactcgcggcccctcgctggacccggccgacaagcgcctggccgtcgaggtcgag
gaccacccgctggcctatggcgatttcgaggggaccatccccaagggtcagtatggcggg
ggctcagtcatggtgtgggaccgggggtattgggcgcccgaacccggcttcgatgtcgcc
aaggggctgaagaagggagaactcaaggtcgtcttcgccggcgagcgggtgaagggcggc
tatgtgctggtcaggctgcgcggcgacaagttcggcggcaagcgcaccaactggcttctg
atcaagcaccgcgatgactatgtgaaggagggcgatggcgagggtatcctcgagcgcaac
gccacctccatcgcctcggggcgcagcatggaagacatcgccgccggcaagggcaaacgg
cccaccgccttcatgacgaagacggcgccgaaggccgacgcggtctggcgctcgagcgac
cccgaagccagcggcgaggccgccgcgaaacagaccgccgcgccgaaggccgcccctcga
cagacgtcgcgagcacggaaacccaaggccctgaaatccttgcccgacttcatcgaaccg
cagctctgcaagctggtcgaccggccgccggtcggcgcccgcttcggccatgagatcaag
ttcgacggctatcgcatgcagctgcgcgtcgagggcggcaaggcgaccctgcgcacccgc
aagggcctcgactggacccacaagttcgccgccatcgccagggacgccgccgccttgccc
gacagcatcatcgacggcgagatctgcgccctcgacgacaacggctcccccagcttcgcc
ggcctgcaggccgcgctgtcggacggcatgaccgacgatctgatcttcttcgccttcgat
ctcatggccgaggggacggaggacctgcgccccctccccctctccgaccgcaaggcccgc
ctcgagaccctgatcggcgaaggcacgccgcgcctgcgctatgtcgagcacttcacccag
gccggcgacgccgtgctcagctccgcctgccgcatggatctggaaggcatcatctccaag
gaccttggggcgccttacgagtccggccgttcgacgacctggaccaaatccaaatgccgg
gccggccatgaggtggtcatcggcggctggacccagacgggcagcgccttccgctccctg
atcgccggggtcttcaaggacggcaagctggtccacgtcggccgcatcggcaccggcttc
ggcaaggacaaggtcgccaccctgctgccgaagctcaaagccatcgagatcgataagtcg
cccttcagcgacaaggagcccaagggccgaagcggcaccaaggccggcgactcccactgg
gtgaagccccagctcgtcgccgagatcgagtacgcgggcctgaccggcgacggcaacatc
cgccaggctgccttcaagggtttgcgcgaggacaagccggccaaggaggtcgaggccgag
gtcgcgccggcctcgacggagttggccgagcccaacccggcggtcgtcaagtcgaagacc
gtcaccgtccgcgccgccaattcggccgaggtgctaggcgtgcgtctctccagcgtcgac
aagccgctctggccggacggcggcgacggatcgcccgtcaccaagctcgagctggcgcaa
tactacgaggccgtcggcgcctggctgctgccgcacatcaagggccggccctgctcgatc
atccgcacgcccgagggcgtcgacggcgagaagttcttccagcgccacctgatgaagggc
gcctcgaacctgctgaccgagacctttgtcagcggtgaccgcaagggctacctgcagatc
gaccgtgtcgaggccctgatcgccgtggcccagaccagcgccaccgaactccacccctgg
aactgtcagcccttcgcccccgatgtccctggccgcctggtcttcgacctcgacccggcg
ccgggcgtcaccttcgacgacgccatcgaggcggcccgcgaggtccgcgaccgcctggag
gacctcggcctcgtcagcttctgcaagaccaccggcggcaagggcctccacgtcgtcacg
ccgctgaccaagtcaaagatcgactggccgaccgccaaggccttcgcccgcgaggtctgc
gcccgcatggccgccgatgcgccggaccgctacctgatcaccatgagcaaggcccagcgc
gagggccggatcttcctcgactacctgcgcaacgaccggatgagcacggccgtcgcgccg
ctgtcgccccgggcccgccccggcgcgacagtgtcgatgccgctgacctggacgcaggtg
aagaaggggctggacccggcgaaatacaccatccgcaccgccccgaagatcgtgaagggc
atgagcgcctgggaagactacggcgacagcgagcgccccatcgcggcggcgatcaagcgg
ctggagcgcggggcgaaggcggcggcctaa
DBGET
integrated database retrieval system
